UHGV-0049057

Genome information

Genome length 37,021 bps

CDS count 56

Completeness 99.03% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049057
vOTU ID	vOTU-008041
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_21443
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.17
Jumbo phage	No

Genome content
Genome length	37,021 bps
GC content	42.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.82%
Average CDS length	628.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049057_1	KOfam	K14059	int; integrase	NA
UHGV-0049057_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0049057_1	UniRef90	UniRef90_A0A3A6JBV3	Site-specific integrase	NA
UHGV-0049057_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0049057_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049057_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049057_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0049057_2	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0049057_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0049057_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0049057_3	UniRef90	UniRef90_A0A417PKX0	XRE family transcriptional regulator	NA
UHGV-0049057_3	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0049057_3	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0049057_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0049057_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0049057_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0049057_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0049057_4	UniRef90	UniRef90_A0A3E2TSC3	XRE family transcriptional regulator	NA
UHGV-0049057_4	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049057_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0049057_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049057_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049057_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0049057_7	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0049057_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049057_9	UniRef90	UniRef90_A0A173W7Z3	Putative phage-type endonuclease	NA
UHGV-0049057_9	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0049057_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0049057_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0049057_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0049057_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0049057_10	PHROG	phrog_674	NA	unknown function
UHGV-0049057_10	UniRef90	UniRef90_UPI00156D61E9	NA	NA
UHGV-0049057_10	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0049057_10	Pfam	PF07083	NA	DUF1351
UHGV-0049057_10	Structural annotation	PF07083	NA	NA
UHGV-0049057_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0049057_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049057_12	UniRef90	UniRef90_A0A173W8R4	p33	NA
UHGV-0049057_12	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0049057_12	Pfam	PF03837	RecT family	RecT
UHGV-0049057_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0049057_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0049057_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0049057_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049057_13	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0049057_13	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0049057_13	Pfam	PF06356	NA	DUF1064
UHGV-0049057_13	Structural annotation	PF06356	NA	NA
UHGV-0049057_14	PHROG	phrog_16304	NA	unknown function
UHGV-0049057_14	UniRef90	UniRef90_A0A173W7E0	NA	NA
UHGV-0049057_14	eggNOG-mapper	394503.Ccel_1845	Helix-turn-helix domain	NA
UHGV-0049057_14	Pfam	PF19808	NA	DUF6291
UHGV-0049057_14	Structural annotation	PF19808	NA	NA
UHGV-0049057_15	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0049057_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0049057_15	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0049057_15	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0049057_15	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0049057_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0049057_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0049057_15	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0049057_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0049057_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0049057_16	UniRef90	UniRef90_A0A3R6PIU8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0049057_16	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0049057_16	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0049057_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0049057_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0049057_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0049057_17	PHROG	phrog_3205	NA	unknown function
UHGV-0049057_17	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-0049057_17	eggNOG-mapper	1243664.CAVL020000054_gene3040	NA	NA
UHGV-0049057_18	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0049057_23	PHROG	phrog_874	NA	unknown function
UHGV-0049057_23	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0049057_23	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0049057_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0049057_24	PHROG	phrog_8684	NA	unknown function
UHGV-0049057_24	UniRef90	UniRef90_A0A822LMA9	YopX domain-containing protein	NA
UHGV-0049057_24	eggNOG-mapper	1497679.EP56_02820	YopX protein	NA
UHGV-0049057_24	Pfam	PF09643	YopX protein	YopX
UHGV-0049057_24	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0049057_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0049057_28	PHROG	phrog_17690	NA	unknown function
UHGV-0049057_28	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0049057_28	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0049057_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049057_29	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0049057_29	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0049057_29	Pfam	PF07374	NA	DUF1492
UHGV-0049057_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0049057_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0049057_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0049057_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0049057_31	UniRef90	UniRef90_A0A3A6J830	Terminase small subunit	NA
UHGV-0049057_31	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0049057_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0049057_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0049057_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0049057_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0049057_32	UniRef90	UniRef90_A0A3A6JKF1	Terminase	NA
UHGV-0049057_32	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0049057_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0049057_32	COG	COG5410	NA	NA
UHGV-0049057_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0049057_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0049057_33	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-0049057_33	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0049057_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049057_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0049057_34	eggNOG-mapper	478749.BRYFOR_08557	NA	NA
UHGV-0049057_34	Structural annotation	PF10651	NA	NA
UHGV-0049057_35	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA
UHGV-0049057_36	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0049057_36	UniRef90	UniRef90_A0A8D9L2C5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0049057_36	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0049057_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0049057_36	COG	COG2369	NA	NA
UHGV-0049057_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0049057_38	PHROG	phrog_872	NA	unknown function
UHGV-0049057_38	UniRef90	UniRef90_UPI0018C70BF8	NA	NA
UHGV-0049057_38	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-0049057_38	Pfam	PF11195	NA	DUF2829
UHGV-0049057_38	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0049057_38	Structural annotation	PF11195	NA	NA
UHGV-0049057_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0049057_39	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0049057_39	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0049057_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0049057_39	Structural annotation	PF06810	NA	NA
UHGV-0049057_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0049057_40	UniRef90	UniRef90_UPI001C0F52E5	N4-gp56 family major capsid protein	NA
UHGV-0049057_40	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0049057_40	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0049057_40	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0049057_41	PHROG	phrog_1236	head protein	head and packaging
UHGV-0049057_41	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0049057_41	Structural annotation	PF05135	NA	NA
UHGV-0049057_42	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0049057_42	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0049057_42	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0049057_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0049057_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0049057_43	UniRef90	UniRef90_UPI00189F42E9	HK97 gp10 family phage protein	NA
UHGV-0049057_43	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0049057_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0049057_44	PHROG	phrog_957	head protein	head and packaging
UHGV-0049057_44	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0049057_44	Structural annotation	PF12691	NA	NA
UHGV-0049057_45	PHROG	phrog_885	major tail protein	tail
UHGV-0049057_45	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0049057_45	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0049057_46	PHROG	phrog_1021	NA	unknown function
UHGV-0049057_46	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0049057_47	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0049057_48	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0049057_48	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0049057_48	COG	COG5412	Phage-related protein	NA
UHGV-0049057_48	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0049057_49	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0049057_49	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0049057_49	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0049057_50	PHROG	phrog_538	minor tail protein	tail
UHGV-0049057_50	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0049057_50	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0049057_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0049057_50	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0049057_51	PHROG	phrog_9994	NA	unknown function
UHGV-0049057_51	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0049057_51	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0049057_51	Structural annotation	NF012201	NA	NA
UHGV-0049057_52	PHROG	phrog_1009	NA	unknown function
UHGV-0049057_52	UniRef90	UniRef90_A0A3A6JFT7	Branched-chain amino acid ABC transporter permease	NA
UHGV-0049057_52	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0049057_53	PHROG	phrog_18218	NA	unknown function
UHGV-0049057_53	UniRef90	UniRef90_A0A374AVT4	Ribonuclease	NA
UHGV-0049057_53	eggNOG-mapper	411474.COPEUT_02638	NA	NA
UHGV-0049057_53	Structural annotation	PF06946	NA	NA
UHGV-0049057_54	KOfam	K07273	acm; lysozyme	NA
UHGV-0049057_54	PHROG	phrog_291	endolysin	lysis
UHGV-0049057_54	UniRef90	UniRef90_A0A173W541	Lysozyme M1	NA
UHGV-0049057_54	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0049057_54	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0049057_54	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0049057_54	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0049057_54	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0049057_56	UniRef90	UniRef90_C0D8J2	HTH cro/C1-type domain-containing protein	NA
UHGV-0049057_56	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0049057_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0049057_56	Structural annotation	PF13443, NF000090, COG3655	NA	NA