UHGV-0049058

Genome information

Genome length 36,287 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049058
vOTU ID	vOTU-075330
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_21452
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.57
Jumbo phage	No

Genome content
Genome length	36,287 bps
GC content	37.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.10%
Average CDS length	556.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049058_1	PHROG	phrog_7245	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0049058_1	eggNOG-mapper	1050201.KB913034_gene350	NA	NA
UHGV-0049058_1	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0049058_1	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0049058_10	PHROG	phrog_24490	NA	unknown function
UHGV-0049058_10	eggNOG-mapper	1235793.C809_02212	NA	NA
UHGV-0049058_11	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0049058_11	UniRef90	UniRef90_Q9AZN9	Orf26	NA
UHGV-0049058_11	eggNOG-mapper	1002809.SSIL_1411	NA	NA
UHGV-0049058_12	PHROG	phrog_918	NA	unknown function
UHGV-0049058_12	UniRef90	UniRef90_UPI001D0B68F4	NA	NA
UHGV-0049058_12	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0049058_12	Pfam	PF19791	NA	DUF6275
UHGV-0049058_12	Structural annotation	PF19791	NA	NA
UHGV-0049058_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0049058_18	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0049058_18	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0049058_22	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-0049058_23	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0049058_23	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0049058_24	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0049058_25	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0049058_25	UniRef90	UniRef90_A0A6I1BF41	Phage_rep_org_N domain-containing protein	NA
UHGV-0049058_25	eggNOG-mapper	755731.Clo1100_1616	Phage replisome organizer	NA
UHGV-0049058_25	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0049058_25	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0049058_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0049058_25	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0049058_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049058_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049058_26	UniRef90	UniRef90_UPI000D5517EB	single-stranded DNA-binding protein	NA
UHGV-0049058_26	eggNOG-mapper	877415.JNJQ01000004_gene1385	Single-stranded DNA-binding protein	NA
UHGV-0049058_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049058_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0049058_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049058_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0049058_26	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0049058_27	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049058_27	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0049058_27	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0049058_28	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0049058_28	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049058_28	UniRef90	UniRef90_UPI00189A64DF	recombinase RecT	NA
UHGV-0049058_28	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0049058_28	Pfam	PF03837	RecT family	RecT
UHGV-0049058_28	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0049058_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0049058_28	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0049058_29	PHROG	phrog_674	NA	unknown function
UHGV-0049058_29	UniRef90	UniRef90_A0A0U3FXX5	Phage-related protein	NA
UHGV-0049058_29	eggNOG-mapper	1234679.BN424_3317	NA	NA
UHGV-0049058_29	Pfam	PF07083	NA	DUF1351
UHGV-0049058_29	Structural annotation	PF07083	NA	NA
UHGV-0049058_30	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049058_30	UniRef90	UniRef90_A0A372SUY9	Recombinase	NA
UHGV-0049058_30	eggNOG-mapper	428127.EUBDOL_01507	YqaJ-like viral recombinase domain	NA
UHGV-0049058_30	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0049058_30	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0049058_30	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0049058_30	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0049058_35	KOfam	K03177	truB, PUS4, TRUB1; tRNA pseudouridine55 synthase [EC:5.4.99.25]	NA
UHGV-0049058_35	UniRef90	UniRef90_E7MQA7	tRNA pseudouridine synthase B	NA
UHGV-0049058_35	eggNOG-mapper	1123263.AUKY01000002_gene104	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	NA
UHGV-0049058_35	Pfam	PF01509	TruB family pseudouridylate synthase (N terminal domain)	TruB_N
UHGV-0049058_35	NCBIFam	TIGR00431.1	tRNA pseudouridine(55) synthase TruB	NA
UHGV-0049058_35	COG	COG0130	tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA	NA
UHGV-0049058_36	KOfam	K17073	lysX1; putative lysine transport system substrate-binding protein	NA
UHGV-0049058_36	PHROG	phrog_10776	NA	unknown function
UHGV-0049058_36	UniRef90	UniRef90_A0A1I4GN86	Amino acid ABC transporter substrate-binding protein, PAAT family	NA
UHGV-0049058_36	eggNOG-mapper	1410628.JNKS01000004_gene2067	Bacterial periplasmic substrate-binding proteins	NA
UHGV-0049058_36	Pfam	PF00497	Bacterial extracellular solute-binding proteins, family 3	SBP_bac_3
UHGV-0049058_36	COG	COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	NA
UHGV-0049058_37	KOfam	K17074	lysX2; putative lysine transport system permease protein	NA
UHGV-0049058_37	PHROG	phrog_18202	NA	unknown function
UHGV-0049058_37	UniRef90	UniRef90_A0A3B9G2F9	Amino acid ABC transporter permease	NA
UHGV-0049058_37	eggNOG-mapper	1410612.JNKO01000030_gene41	Binding-protein-dependent transport system inner membrane component	NA
UHGV-0049058_37	Pfam	PF00528	Binding-protein-dependent transport system inner membrane component	BPD_transp_1
UHGV-0049058_37	NCBIFam	TIGR01726.1	ABC transporter permease subunit	NA
UHGV-0049058_37	COG	COG0765	ABC-type amino acid transport system, permease component	NA
UHGV-0049058_38	KOfam	K02028	ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]	NA
UHGV-0049058_38	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0049058_38	UniRef90	UniRef90_A0A1S9BRZ2	ABC transporter	NA
UHGV-0049058_38	eggNOG-mapper	1410612.JNKO01000030_gene40	ABC transporter, ATP-binding protein	NA
UHGV-0049058_38	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0049058_38	COG	COG1126	ABC-type polar amino acid transport system, ATPase component	NA
UHGV-0049058_38	Structural annotation	PF00005, MF_01005, TIGR02211, COG1136	NA	NA
UHGV-0049058_39	KOfam	K08602	pepF, pepB; oligoendopeptidase F [EC:3.4.24.-]	NA
UHGV-0049058_39	UniRef90	UniRef90_A0A3D1J732	M3 family oligoendopeptidase (Fragment)	NA
UHGV-0049058_39	eggNOG-mapper	706433.HMPREF9430_01630	Oligoendopeptidase, M3 family	NA
UHGV-0049058_39	Pfam	PF01432	Peptidase family M3	Peptidase_M3
UHGV-0049058_39	COG	COG1164	Oligoendopeptidase F	NA
UHGV-0049058_40	PHROG	phrog_4105	NA	unknown function
UHGV-0049058_40	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0049058_40	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0049058_41	PHROG	phrog_1129	holin	lysis
UHGV-0049058_41	UniRef90	UniRef90_A0A1M6MLQ1	Phage holin family Hol44, holin superfamily V	NA
UHGV-0049058_41	eggNOG-mapper	428127.EUBDOL_01567	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0049058_41	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0049058_41	Structural annotation	PF06946	NA	NA
UHGV-0049058_42	KOfam	K07273	acm; lysozyme	NA
UHGV-0049058_42	PHROG	phrog_291	endolysin	lysis
UHGV-0049058_42	UniRef90	UniRef90_A0A3F3PBL6	LysM domain-containing protein	NA
UHGV-0049058_42	eggNOG-mapper	1235798.C817_00299	family 25	NA
UHGV-0049058_42	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0049058_42	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0049058_42	Pfam	PF01476	LysM domain	LysM
UHGV-0049058_42	COG	COG1388	LysM repeat	NA
UHGV-0049058_42	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0049058_43	Pfam	PF04255	NA	DUF433
UHGV-0049058_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0049058_46	UniRef90	UniRef90_UPI000CF99656	phage tail protein	NA
UHGV-0049058_46	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0049058_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0049058_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0049058_46	COG	COG4926	Phage-related protein	NA
UHGV-0049058_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0049058_47	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0049058_47	eggNOG-mapper	908337.HMPREF9257_0528	phage tail	NA
UHGV-0049058_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0049058_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0049058_48	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0049058_48	UniRef90	UniRef90_A0A1M5PWE6	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0049058_48	eggNOG-mapper	1220551.SCHR_00610	Phage tail tape measure protein	NA
UHGV-0049058_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0049058_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0049058_48	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0049058_50	PHROG	phrog_88	major tail protein	tail
UHGV-0049058_50	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0049058_50	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0049058_50	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0049058_50	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0049058_51	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0049058_51	Structural annotation	TIGR01725	NA	NA
UHGV-0049058_52	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0049058_52	Structural annotation	PF05657	NA	NA
UHGV-0049058_53	PHROG	phrog_19734	NA	unknown function
UHGV-0049058_53	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0049058_55	PHROG	phrog_10	major head protein	head and packaging
UHGV-0049058_55	UniRef90	UniRef90_UPI000CF94CB7	phage major capsid protein	NA
UHGV-0049058_55	eggNOG-mapper	33035.JPJF01000039_gene273	phage major capsid protein, HK97 family	NA
UHGV-0049058_55	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0049058_55	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0049058_55	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0049058_55	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049058_56	KOfam	K06904	NA	NA
UHGV-0049058_56	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0049058_56	UniRef90	UniRef90_UPI000CF8530D	HK97 family phage prohead protease	NA
UHGV-0049058_56	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0049058_56	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0049058_56	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0049058_56	COG	COG3740	Phage head maturation protease	NA
UHGV-0049058_56	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0049058_57	PHROG	phrog_12	portal protein	head and packaging
UHGV-0049058_57	UniRef90	UniRef90_UPI000CF8AFF7	phage portal protein	NA
UHGV-0049058_57	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0049058_57	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0049058_57	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0049058_57	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0049058_57	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0049058_58	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0049058_58	UniRef90	UniRef90_R5VJG5	Phage terminase large subunit	NA
UHGV-0049058_58	eggNOG-mapper	491915.Aflv_0661	Phage Terminase	NA
UHGV-0049058_58	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0049058_58	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0049058_58	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0049058_58	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0049058_59	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0049058_59	UniRef90	UniRef90_UPI000307376F	P27 family phage terminase small subunit	NA
UHGV-0049058_59	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0049058_59	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0049058_59	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0049058_60	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049058_60	UniRef90	UniRef90_UPI00189741C6	HNH endonuclease	NA
UHGV-0049058_60	eggNOG-mapper	33035.JPJF01000113_gene2099	HNH nucleases	NA
UHGV-0049058_60	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA