UHGV-0049140

Genome information

Genome length 38,214 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049140
vOTU ID	vOTU-013856
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_661
BioSample	SAMD00036379
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.15
Jumbo phage	No

Genome content
Genome length	38,214 bps
GC content	55.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.44%
Average CDS length	511.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049140_3	PHROG	phrog_32852	NA	unknown function
UHGV-0049140_4	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0049140_4	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0049140_4	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0049140_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0049140_5	UniRef90	UniRef90_A0A2A6Z722	Bro-N domain-containing protein	NA
UHGV-0049140_5	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-0049140_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0049140_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0049140_5	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0049140_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0049140_10	UniRef90	UniRef90_A0A2A6Z721	Transcriptional regulator	NA
UHGV-0049140_10	eggNOG-mapper	1111454.HMPREF1250_1029	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049140_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049140_10	Structural annotation	PF13560, NF041951, COG1476	NA	NA
UHGV-0049140_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0049140_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0049140_11	UniRef90	UniRef90_A0A2A6Z724	Repressor LexA	NA
UHGV-0049140_11	eggNOG-mapper	748224.HMPREF9436_01793	NA	NA
UHGV-0049140_11	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0049140_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049140_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0049140_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0049140_11	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0049140_12	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0049140_13	PHROG	phrog_22683	NA	unknown function
UHGV-0049140_13	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-0049140_13	eggNOG-mapper	1008453.HMPREF9957_0722	NA	NA
UHGV-0049140_13	AcrCatalog	cluster_3962	NA	NA
UHGV-0049140_13	Pfam	PF13783	NA	DUF4177
UHGV-0049140_13	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0049140_14	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0049140_14	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0049140_14	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-0049140_14	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-0049140_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049140_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049140_15	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-0049140_15	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0049140_17	KOfam	K14059	int; integrase	NA
UHGV-0049140_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0049140_17	UniRef90	UniRef90_A0A6N7TNW8	Tyrosine-type recombinase/integrase	NA
UHGV-0049140_17	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0049140_17	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0049140_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049140_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049140_17	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0049140_18	KOfam	K14059	int; integrase	NA
UHGV-0049140_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0049140_18	UniRef90	UniRef90_UPI001C3A4BBE	Site-specific integrase	NA
UHGV-0049140_18	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0049140_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049140_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049140_18	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0049140_19	eggNOG-mapper	743718.Isova_0870	NA	NA
UHGV-0049140_19	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0049140_20	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0049140_20	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0049140_20	UniRef90	UniRef90_A0A2A6Z724	Repressor LexA	NA
UHGV-0049140_20	eggNOG-mapper	748224.HMPREF9436_01793	NA	NA
UHGV-0049140_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049140_20	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0049140_20	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0049140_20	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0049140_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0049140_21	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0049140_21	UniRef90	UniRef90_A0A3E2U242	Helix-turn-helix domain-containing protein	NA
UHGV-0049140_21	eggNOG-mapper	888060.HMPREF9081_1958	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0049140_21	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0049140_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049140_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0049140_24	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0049140_24	Pfam	PF12957	NA	DUF3846
UHGV-0049140_24	Structural annotation	PF12957	NA	NA
UHGV-0049140_25	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0049140_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049140_27	PHROG	phrog_37789	NA	unknown function
UHGV-0049140_29	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0049140_34	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0049140_34	PHROG	phrog_200	lipoprotein	other
UHGV-0049140_34	UniRef90	UniRef90_A0A3A6JM18	Prohibitin family protein	NA
UHGV-0049140_34	eggNOG-mapper	748224.HMPREF9436_03073	SPFH Band 7 PHB domain protein	NA
UHGV-0049140_34	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0049140_34	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0049140_34	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0049140_35	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0049140_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0049140_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0049140_36	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0049140_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0049140_37	PHROG	phrog_7566	NA	unknown function
UHGV-0049140_37	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0049140_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049140_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049140_38	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0049140_38	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0049140_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049140_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0049140_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049140_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0049140_38	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0049140_39	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0049140_39	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0049140_39	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0049140_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0049140_39	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0049140_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0049140_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0049140_40	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0049140_40	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0049140_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0049140_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0049140_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0049140_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0049140_41	PHROG	phrog_7711	NA	unknown function
UHGV-0049140_41	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0049140_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049140_43	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0049140_43	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0049140_43	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0049140_44	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049140_44	UniRef90	UniRef90_A0A564SBG0	HNH endonuclease	NA
UHGV-0049140_44	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0049140_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0049140_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0049140_45	PHROG	phrog_104	portal protein	head and packaging
UHGV-0049140_45	UniRef90	UniRef90_A0A564SBV0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0049140_45	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0049140_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049140_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0049140_46	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0049140_46	UniRef90	UniRef90_A0A1C5Y960	CdiA_C domain-containing protein	NA
UHGV-0049140_46	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0049140_46	COG	COG2369	NA	NA
UHGV-0049140_46	Structural annotation	PF18451	NA	NA
UHGV-0049140_47	PHROG	phrog_17688	NA	unknown function
UHGV-0049140_47	UniRef90	UniRef90_A0A564SCG0	Phage Terminase	NA
UHGV-0049140_47	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0049140_47	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0049140_47	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0049140_48	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0049140_48	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0049140_48	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0049140_48	Structural annotation	PF14265	NA	NA
UHGV-0049140_49	PHROG	phrog_32396	NA	unknown function
UHGV-0049140_49	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-0049140_49	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0049140_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0049140_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0049140_49	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049140_51	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0049140_51	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0049140_51	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0049140_51	Pfam	PF09355	NA	Phage_Gp19
UHGV-0049140_51	Structural annotation	PF09355	NA	NA
UHGV-0049140_52	PHROG	phrog_501	head closure Hc1	connector
UHGV-0049140_52	UniRef90	UniRef90_G2SN45	NA	NA
UHGV-0049140_52	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0049140_52	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0049140_53	PHROG	phrog_387	neck protein	connector
UHGV-0049140_53	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0049140_53	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0049140_54	PHROG	phrog_123	tail terminator	connector
UHGV-0049140_54	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0049140_54	Structural annotation	PF06141	NA	NA
UHGV-0049140_55	PHROG	phrog_117	major tail protein	tail
UHGV-0049140_55	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0049140_55	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0049140_55	COG	COG5492	NA	NA
UHGV-0049140_55	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0049140_56	PHROG	phrog_1526	NA	unknown function
UHGV-0049140_56	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0049140_57	Structural annotation	PF17318	NA	NA
UHGV-0049140_58	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0049140_58	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0049140_58	COG	COG1511	NA	NA
UHGV-0049140_59	PHROG	phrog_36410	NA	unknown function
UHGV-0049140_59	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0049140_59	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0049140_59	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0049140_60	PHROG	phrog_538	minor tail protein	tail
UHGV-0049140_60	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0049140_60	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0049140_60	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0049140_60	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0049140_61	PHROG	phrog_9534	head protein	head and packaging
UHGV-0049140_61	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0049140_61	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0049140_61	Structural annotation	PF20747	NA	NA
UHGV-0049140_62	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0049140_62	COG	COG5492	NA	NA
UHGV-0049140_63	PHROG	phrog_29248	NA	unknown function
UHGV-0049140_64	PHROG	phrog_2310	NA	unknown function
UHGV-0049140_65	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0049140_65	PHROG	phrog_894	endolysin	lysis
UHGV-0049140_65	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0049140_65	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0049140_65	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0049140_65	COG	COG3108	NA	NA
UHGV-0049140_65	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0049140_66	PHROG	phrog_1863	NA	unknown function
UHGV-0049140_66	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0049140_67	PHROG	phrog_263	holin	lysis
UHGV-0049140_67	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-0049140_67	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0049140_67	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0049140_67	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0049140_67	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0049140_68	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0049140_68	PHROG	phrog_24603	NA	unknown function
UHGV-0049140_68	UniRef90	UniRef90_E2ZIC9	Spo0A_C domain-containing protein	NA
UHGV-0049140_68	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0049140_68	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0049140_68	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0049140_68	Structural annotation	PF08769, TIGR02875	NA	NA