UHGV-0049283

Genome information

Genome length 31,280 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9571

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049283
vOTU ID	vOTU-067549
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2416
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9571
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.48
Jumbo phage	No

Genome content
Genome length	31,280 bps
GC content	28.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.37%
Average CDS length	579.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049283_1	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0049283_1	UniRef90	UniRef90_A0A0B4S2X4	Antitoxin HicB	NA
UHGV-0049283_1	eggNOG-mapper	411465.PEPMIC_00704	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0049283_1	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0049283_1	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0049283_2	KOfam	K14059	int; integrase	NA
UHGV-0049283_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0049283_2	UniRef90	UniRef90_A8SKK0	Site-specific recombinase, phage integrase family	NA
UHGV-0049283_2	eggNOG-mapper	411465.PEPMIC_00705	Phage integrase family	NA
UHGV-0049283_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049283_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049283_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0049283_3	PHROG	phrog_38135	NA	unknown function
UHGV-0049283_3	UniRef90	UniRef90_A8SKK1	TM2 domain protein	NA
UHGV-0049283_3	eggNOG-mapper	411465.PEPMIC_00706	NA	NA
UHGV-0049283_3	Pfam	PF14020	NA	DUF4236
UHGV-0049283_3	Pfam	PF05154	TM2 domain	TM2
UHGV-0049283_3	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0049283_3	Structural annotation	PF14020, PF05154	NA	NA
UHGV-0049283_4	PHROG	phrog_87	metallo-protease	other
UHGV-0049283_4	UniRef90	UniRef90_UPI00124C33E6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0049283_4	eggNOG-mapper	411465.PEPMIC_00707	Zn peptidase	NA
UHGV-0049283_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0049283_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0049283_5	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0049283_5	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0049283_5	UniRef90	UniRef90_A0A7Z0LH98	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0049283_5	eggNOG-mapper	411465.PEPMIC_00708	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0049283_5	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0049283_5	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0049283_5	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0049283_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0049283_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049283_6	UniRef90	UniRef90_A8SKK6	DNA-binding helix-turn-helix protein	NA
UHGV-0049283_6	eggNOG-mapper	411465.PEPMIC_00709	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049283_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049283_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049283_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0049283_7	UniRef90	UniRef90_UPI000845BCEE	NA	NA
UHGV-0049283_7	eggNOG-mapper	883114.HMPREF9709_01221	NA	NA
UHGV-0049283_7	Pfam	PF05339	NA	DUF739
UHGV-0049283_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0049283_9	PHROG	phrog_585	NA	unknown function
UHGV-0049283_9	UniRef90	UniRef90_UPI001C3E7387	NA	NA
UHGV-0049283_9	eggNOG-mapper	411465.PEPMIC_00712	NA	NA
UHGV-0049283_9	Pfam	PF10711	NA	DUF2513
UHGV-0049283_9	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0049283_10	PHROG	phrog_6058	NA	unknown function
UHGV-0049283_10	UniRef90	UniRef90_UPI000D0EB5B4	DNA-binding protein	NA
UHGV-0049283_10	eggNOG-mapper	469616.FMAG_02049	Helix-turn-helix domain	NA
UHGV-0049283_10	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0049283_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049283_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049283_15	UniRef90	UniRef90_A8SKL9	Single-stranded DNA-binding protein	NA
UHGV-0049283_15	eggNOG-mapper	411465.PEPMIC_00719	Single-stranded DNA-binding protein	NA
UHGV-0049283_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049283_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0049283_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049283_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0049283_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0049283_16	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0049283_16	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0049283_16	UniRef90	UniRef90_A8SKM0	N-6 DNA Methylase	NA
UHGV-0049283_16	eggNOG-mapper	411465.PEPMIC_00720	COG0286 Type I restriction-modification system methyltransferase subunit	NA
UHGV-0049283_16	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0049283_16	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0049283_16	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0049283_17	Structural annotation	PF19005	NA	NA
UHGV-0049283_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0049283_19	eggNOG-mapper	411465.PEPMIC_00724	NA	NA
UHGV-0049283_19	Structural annotation	PF21578	NA	NA
UHGV-0049283_20	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0049283_20	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0049283_20	UniRef90	UniRef90_A8SKM6	DNA adenine methylase	NA
UHGV-0049283_20	eggNOG-mapper	411465.PEPMIC_00725	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0049283_20	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0049283_20	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0049283_20	COG	COG0338	DNA-adenine methylase	NA
UHGV-0049283_20	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0049283_22	KOfam	K03700	recU; recombination protein U	NA
UHGV-0049283_22	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049283_22	UniRef90	UniRef90_A8SKM8	Holliday junction resolvase RecU	NA
UHGV-0049283_22	eggNOG-mapper	411465.PEPMIC_00727	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0049283_22	Pfam	PF03838	Recombination protein U	RecU
UHGV-0049283_22	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0049283_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049283_24	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0049283_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049283_25	UniRef90	UniRef90_UPI001BAFAC45	HNH endonuclease	NA
UHGV-0049283_25	eggNOG-mapper	411465.PEPMIC_00730	HNH nucleases	NA
UHGV-0049283_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0049283_26	PHROG	phrog_1066	NA	unknown function
UHGV-0049283_26	UniRef90	UniRef90_A0A7X8WV97	NA	NA
UHGV-0049283_26	eggNOG-mapper	411465.PEPMIC_00731	NA	NA
UHGV-0049283_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0049283_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0049283_27	UniRef90	UniRef90_A8SKN5	Putative phage terminase, large subunit	NA
UHGV-0049283_27	eggNOG-mapper	411465.PEPMIC_00732	large subunit	NA
UHGV-0049283_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0049283_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0049283_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0049283_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0049283_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0049283_28	UniRef90	UniRef90_UPI001BAEE0FF	phage portal protein	NA
UHGV-0049283_28	eggNOG-mapper	411465.PEPMIC_00733	Phage portal protein	NA
UHGV-0049283_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0049283_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0049283_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0049283_29	KOfam	K06904	NA	NA
UHGV-0049283_29	PHROG	phrog_9644	head maturation protease	head and packaging
UHGV-0049283_29	UniRef90	UniRef90_A8SKN7	Phage prohead protease, HK97 family	NA
UHGV-0049283_29	eggNOG-mapper	411465.PEPMIC_00734	NA	NA
UHGV-0049283_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0049283_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0049283_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0049283_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0049283_30	UniRef90	UniRef90_A8SKN8	Phage major capsid protein, HK97 family	NA
UHGV-0049283_30	eggNOG-mapper	411465.PEPMIC_00735	Phage capsid family	NA
UHGV-0049283_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0049283_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0049283_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0049283_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049283_32	PHROG	phrog_5223	neck protein	connector
UHGV-0049283_32	UniRef90	UniRef90_A8SKP1	Putative phage DNA packaging protein	NA
UHGV-0049283_32	eggNOG-mapper	411465.PEPMIC_00737	NA	NA
UHGV-0049283_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0049283_32	Structural annotation	TIGR01560	NA	NA
UHGV-0049283_33	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0049283_33	UniRef90	UniRef90_A8SKP2	Putative phage head-tail adaptor	NA
UHGV-0049283_33	eggNOG-mapper	411465.PEPMIC_00738	NA	NA
UHGV-0049283_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0049283_34	UniRef90	UniRef90_A0A1T5AM00	Phage protein, HK97 gp10 family	NA
UHGV-0049283_34	eggNOG-mapper	411465.PEPMIC_00739	NA	NA
UHGV-0049283_34	Structural annotation	TIGR01725	NA	NA
UHGV-0049283_35	PHROG	phrog_957	head protein	head and packaging
UHGV-0049283_35	eggNOG-mapper	411465.PEPMIC_00740	NA	NA
UHGV-0049283_35	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0049283_36	PHROG	phrog_885	major tail protein	tail
UHGV-0049283_36	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0049283_36	eggNOG-mapper	411465.PEPMIC_00741	NA	NA
UHGV-0049283_36	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0049283_37	eggNOG-mapper	411465.PEPMIC_00742	NA	NA
UHGV-0049283_39	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0049283_39	UniRef90	UniRef90_A8SKQ0	TMP repeat protein	NA
UHGV-0049283_39	eggNOG-mapper	411465.PEPMIC_00744	Phage tail tape measure protein, TP901 family	NA
UHGV-0049283_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0049283_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0049283_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0049283_40	UniRef90	UniRef90_A8SKQ1	Putative phage tail component domain protein	NA
UHGV-0049283_40	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0049283_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0049283_40	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0049283_41	PHROG	phrog_3558	tail protein	tail
UHGV-0049283_41	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0049283_41	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0049283_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0049283_41	COG	COG4926	Phage-related protein	NA
UHGV-0049283_41	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0049283_42	PHROG	phrog_372	tail protein	tail
UHGV-0049283_42	UniRef90	UniRef90_UPI000B8B5168	NA	NA
UHGV-0049283_42	eggNOG-mapper	411465.PEPMIC_00747	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0049283_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0049283_42	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0049283_43	Structural annotation	PF11314, PF14600, PF02839	NA	NA
UHGV-0049283_44	PHROG	phrog_4105	NA	unknown function
UHGV-0049283_44	eggNOG-mapper	1336234.JAGN01000004_gene511	NA	NA
UHGV-0049283_45	PHROG	phrog_962	holin	lysis
UHGV-0049283_45	UniRef90	UniRef90_A8SKQ7	Holin, phage phi LC3 family	NA
UHGV-0049283_45	eggNOG-mapper	411465.PEPMIC_00750	Bacteriophage holin	NA
UHGV-0049283_45	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0049283_45	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0049283_45	COG	COG5546	NA	NA
UHGV-0049283_45	Structural annotation	COG5546	NA	NA
UHGV-0049283_46	PHROG	phrog_774	NA	unknown function
UHGV-0049283_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0049283_47	PHROG	phrog_3088	amidase	lysis
UHGV-0049283_47	UniRef90	UniRef90_A8SKR0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049283_47	eggNOG-mapper	411465.PEPMIC_00752	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049283_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0049283_47	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0049283_48	PHROG	phrog_2277	NA	unknown function
UHGV-0049283_48	eggNOG-mapper	411465.PEPMIC_00753	NA	NA
UHGV-0049283_50	KOfam	K01623	ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]	NA
UHGV-0049283_50	UniRef90	UniRef90_A0A0B4S328	Fructose-bisphosphate aldolase	NA
UHGV-0049283_50	eggNOG-mapper	411465.PEPMIC_00755	Fructose-bisphosphate aldolase class-I	NA
UHGV-0049283_50	Pfam	PF00274	Fructose-bisphosphate aldolase class-I	Glycolytic
UHGV-0049283_50	NCBIFam	NF003784.0	fructose bisphosphate aldolase	NA
UHGV-0049283_50	COG	COG3588	Fructose-bisphosphate aldolase class 1	NA