UHGV-0049286

Genome information

Genome length 42,264 bps

CDS count 68

Completeness 84.73% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049286
vOTU ID	vOTU-018873
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2421
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.09
Jumbo phage	No

Genome content
Genome length	42,264 bps
GC content	44.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.09%
Average CDS length	576.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049286_4	UniRef90	UniRef90_A0A4S2A7A9	NA	NA
UHGV-0049286_7	PHROG	phrog_2329	NA	unknown function
UHGV-0049286_7	UniRef90	UniRef90_A0A7C6Z4D9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0049286_7	Structural annotation	PF04014, COG2336	NA	NA
UHGV-0049286_8	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0049286_8	UniRef90	UniRef90_B0N9Z9	ParB domain-containing protein	NA
UHGV-0049286_8	eggNOG-mapper	411468.CLOSCI_00265	ParB-like nuclease domain	NA
UHGV-0049286_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0049286_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0049286_8	Structural annotation	PF02195, PF18579, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0049286_9	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0049286_9	UniRef90	UniRef90_A0A4R4FGR6	NA	NA
UHGV-0049286_9	eggNOG-mapper	411468.CLOSCI_00266	NA	NA
UHGV-0049286_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0049286_9	Pfam	PF11922	NA	DUF3440
UHGV-0049286_9	COG	COG3969	NA	NA
UHGV-0049286_9	Structural annotation	PF11922, PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0049286_10	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0049286_10	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0049286_10	UniRef90	UniRef90_B0NA01	Helicase C-terminal domain protein	NA
UHGV-0049286_10	eggNOG-mapper	411468.CLOSCI_00267	Bacterial SNF2 helicase associated	NA
UHGV-0049286_10	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0049286_10	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0049286_10	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0049286_10	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0049286_10	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0049286_11	PHROG	phrog_16123	NA	unknown function
UHGV-0049286_11	eggNOG-mapper	411468.CLOSCI_00268	NA	NA
UHGV-0049286_11	Structural annotation	PF08455	NA	NA
UHGV-0049286_12	PHROG	phrog_21357	endolysin	lysis
UHGV-0049286_12	UniRef90	UniRef90_B0NA03	Peptidase C51 domain-containing protein	NA
UHGV-0049286_12	eggNOG-mapper	411468.CLOSCI_00269	cysteine-type peptidase activity	NA
UHGV-0049286_12	Pfam	PF05257	CHAP domain	CHAP
UHGV-0049286_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0049286_12	Structural annotation	PF01471, PF10030, TIGR02594, TIGR02869, COG3409, COG0791	NA	NA
UHGV-0049286_14	PHROG	phrog_199	holin	lysis
UHGV-0049286_14	UniRef90	UniRef90_B0NA05	Toxin secretion/phage lysis holin	NA
UHGV-0049286_14	eggNOG-mapper	411468.CLOSCI_00271	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0049286_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0049286_14	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0049286_14	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0049286_14	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0049286_15	PHROG	phrog_1382	NA	unknown function
UHGV-0049286_15	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0049286_16	PHROG	phrog_12931	NA	unknown function
UHGV-0049286_16	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0049286_18	PHROG	phrog_9994	NA	unknown function
UHGV-0049286_18	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-0049286_18	eggNOG-mapper	411468.CLOSCI_00275	NA	NA
UHGV-0049286_18	Structural annotation	PF20747	NA	NA
UHGV-0049286_19	PHROG	phrog_538	minor tail protein	tail
UHGV-0049286_19	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0049286_19	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-0049286_19	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0049286_19	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0049286_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0049286_20	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0049286_20	eggNOG-mapper	411468.CLOSCI_00277	NA	NA
UHGV-0049286_20	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0049286_21	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0049286_21	UniRef90	UniRef90_B0NA12	Phage tail tape measure protein, TP901 family	NA
UHGV-0049286_21	eggNOG-mapper	411468.CLOSCI_00278	phage tail tape measure protein	NA
UHGV-0049286_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0049286_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0049286_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0049286_21	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0049286_22	eggNOG-mapper	411468.CLOSCI_00279	NA	NA
UHGV-0049286_23	Structural annotation	PF16462	NA	NA
UHGV-0049286_24	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0049286_24	eggNOG-mapper	411468.CLOSCI_00281	NA	NA
UHGV-0049286_24	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0049286_25	Structural annotation	PF12691	NA	NA
UHGV-0049286_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0049286_26	UniRef90	UniRef90_UPI000C75B8C6	HK97 gp10 family phage protein	NA
UHGV-0049286_26	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0049286_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0049286_26	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0049286_27	UniRef90	UniRef90_UPI001E498C7F	phage head-tail adapter protein	NA
UHGV-0049286_27	eggNOG-mapper	411468.CLOSCI_00284	NA	NA
UHGV-0049286_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0049286_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0049286_28	UniRef90	UniRef90_UPI001C3B0296	Phage head-tail connector protein	NA
UHGV-0049286_28	eggNOG-mapper	1280689.AUJC01000003_gene968	Phage gp6-like head-tail connector protein	NA
UHGV-0049286_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0049286_28	Structural annotation	PF05135	NA	NA
UHGV-0049286_29	PHROG	phrog_247	major head protein	head and packaging
UHGV-0049286_29	UniRef90	UniRef90_UPI0001F01BBD	major capsid protein	NA
UHGV-0049286_29	eggNOG-mapper	411468.CLOSCI_00286	NA	NA
UHGV-0049286_29	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0049286_29	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0049286_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0049286_30	UniRef90	UniRef90_UPI0001F01BBC	phage scaffolding protein	NA
UHGV-0049286_30	eggNOG-mapper	411468.CLOSCI_00287	Phage minor structural protein GP20	NA
UHGV-0049286_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0049286_30	Structural annotation	PF06810	NA	NA
UHGV-0049286_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0049286_34	UniRef90	UniRef90_B0NA25	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0049286_34	eggNOG-mapper	411468.CLOSCI_00291	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0049286_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0049286_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0049286_34	COG	COG2369	NA	NA
UHGV-0049286_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0049286_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0049286_35	UniRef90	UniRef90_B0NA26	Phage portal protein, SPP1 family	NA
UHGV-0049286_35	eggNOG-mapper	411468.CLOSCI_00292	Phage portal protein, SPP1 family	NA
UHGV-0049286_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049286_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0049286_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0049286_36	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0049286_36	UniRef90	UniRef90_UPI00164E3225	phage terminase large subunit	NA
UHGV-0049286_36	eggNOG-mapper	411468.CLOSCI_00293	TIGRFAM Phage	NA
UHGV-0049286_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0049286_36	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0049286_36	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0049286_36	COG	COG5410	NA	NA
UHGV-0049286_36	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0049286_37	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0049286_37	UniRef90	UniRef90_UPI000C83637A	transposase	NA
UHGV-0049286_37	eggNOG-mapper	411468.CLOSCI_00294	transposase activity	NA
UHGV-0049286_37	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0049286_37	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0049286_37	Structural annotation	PF07141	NA	NA
UHGV-0049286_38	PHROG	phrog_30343	NA	unknown function
UHGV-0049286_38	UniRef90	UniRef90_A0A415ZYR4	N-acetyltransferase	NA
UHGV-0049286_38	eggNOG-mapper	641107.CDLVIII_1322	NA	NA
UHGV-0049286_38	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0049286_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049286_39	UniRef90	UniRef90_A0A174KVR7	ECF subfamily RNA polymerase sigma-24 subunit	NA
UHGV-0049286_39	eggNOG-mapper	411468.CLOSCI_00296	NA	NA
UHGV-0049286_39	Structural annotation	MF_00307	NA	NA
UHGV-0049286_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0049286_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0049286_40	UniRef90	UniRef90_B0NA30	Site-specific recombinase, phage integrase family	NA
UHGV-0049286_40	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-0049286_40	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0049286_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049286_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0049286_40	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0049286_41	PHROG	phrog_874	NA	unknown function
UHGV-0049286_41	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0049286_41	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0049286_41	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0049286_42	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0049286_42	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0049286_42	UniRef90	UniRef90_B0NA32	Methyltransferase	NA
UHGV-0049286_42	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0049286_42	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0049286_42	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0049286_42	COG	COG0863	DNA modification methylase	NA
UHGV-0049286_42	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0049286_44	eggNOG-mapper	411468.CLOSCI_00301	NA	NA
UHGV-0049286_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0049286_45	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0049286_45	UniRef90	UniRef90_B0NA35	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0049286_45	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0049286_45	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0049286_45	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0049286_45	COG	COG0338	DNA-adenine methylase	NA
UHGV-0049286_45	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0049286_48	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0049286_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0049286_48	UniRef90	UniRef90_B0NA38	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0049286_48	eggNOG-mapper	411468.CLOSCI_00305	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0049286_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0049286_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0049286_49	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0049286_49	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0049286_49	UniRef90	UniRef90_B0NA39	AAA_31 domain-containing protein	NA
UHGV-0049286_49	eggNOG-mapper	411468.CLOSCI_00306	AAA domain	NA
UHGV-0049286_49	Pfam	PF13614	AAA domain	AAA_31
UHGV-0049286_49	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0049286_49	Structural annotation	PF13614, MF_00533, NF041546, COG1192	NA	NA
UHGV-0049286_53	PHROG	phrog_25488	NA	unknown function
UHGV-0049286_53	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0049286_54	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0049286_54	UniRef90	UniRef90_B0NA44	Phg_2220_C domain-containing protein	NA
UHGV-0049286_54	eggNOG-mapper	411468.CLOSCI_00311	Transcriptional regulator	NA
UHGV-0049286_54	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0049286_54	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0049286_54	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0049286_54	Structural annotation	PF08222, NF033788, COG4901	NA	NA
UHGV-0049286_55	PHROG	phrog_2113	NA	unknown function
UHGV-0049286_55	Structural annotation	PF21715	NA	NA
UHGV-0049286_56	PHROG	phrog_7566	NA	unknown function
UHGV-0049286_56	UniRef90	UniRef90_UPI000C7676A6	phosphoenolpyruvate carboxykinase	NA
UHGV-0049286_57	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0049286_57	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0049286_58	PHROG	phrog_14970	NA	unknown function
UHGV-0049286_58	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0049286_58	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0049286_58	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0049286_59	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0049286_59	PHROG	phrog_5889	NA	unknown function
UHGV-0049286_59	UniRef90	UniRef90_B0NA49	HDc domain-containing protein	NA
UHGV-0049286_59	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0049286_59	Pfam	PF01966	HD domain	HD
UHGV-0049286_59	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0049286_59	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0049286_62	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0049286_62	eggNOG-mapper	1304866.K413DRAFT_1183	NA	NA
UHGV-0049286_62	Structural annotation	PF13744, MF_00535, NF010465, COG3655	NA	NA
UHGV-0049286_64	eggNOG-mapper	411468.CLOSCI_00322	NA	NA
UHGV-0049286_65	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0049286_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049286_65	UniRef90	UniRef90_B0NA56	DNA-binding helix-turn-helix protein	NA
UHGV-0049286_65	eggNOG-mapper	411468.CLOSCI_00323	sequence-specific DNA binding	NA
UHGV-0049286_65	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0049286_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049286_65	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0049286_68	KOfam	K14059	int; integrase	NA
UHGV-0049286_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0049286_68	UniRef90	UniRef90_B0NA58	Site-specific recombinase, phage integrase family	NA
UHGV-0049286_68	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-0049286_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049286_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049286_68	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA