UHGV-0049355

Genome information

Genome length 36,303 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9552

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049355
vOTU ID	vOTU-009933
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3793
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9552
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.33
Jumbo phage	No

Genome content
Genome length	36,303 bps
GC content	45.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.70%
Average CDS length	685.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049355_2	KOfam	K18009	budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]	NA
UHGV-0049355_2	PHROG	phrog_3142	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0049355_2	UniRef90	UniRef90_A0A1C6GEX0	3-oxoacyl-[acyl-carrier-protein] reductase FabG	NA
UHGV-0049355_2	eggNOG-mapper	388399.SSE37_02275	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	NA
UHGV-0049355_2	Pfam	PF13561	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
UHGV-0049355_2	COG	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	NA
UHGV-0049355_2	Structural annotation	PF13561, MF_01647, NF004198, COG1028	NA	NA
UHGV-0049355_3	KOfam	K06871	NA	NA
UHGV-0049355_3	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-0049355_3	UniRef90	UniRef90_A0A1C6GF59	Anaerobic sulfatase-maturating enzyme	NA
UHGV-0049355_3	eggNOG-mapper	1121396.KB893064_gene1164	4Fe-4S single cluster domain	NA
UHGV-0049355_3	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-0049355_3	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0049355_3	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-0049355_3	Structural annotation	PF04055, MF_00660, TIGR04136, COG0641	NA	NA
UHGV-0049355_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0049355_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0049355_4	UniRef90	UniRef90_A0A1C6GEY5	Resolvase, N terminal domain	NA
UHGV-0049355_4	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-0049355_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0049355_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0049355_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0049355_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0049355_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0049355_5	UniRef90	UniRef90_R6SEH3	TPR Domain containing protein	NA
UHGV-0049355_5	Structural annotation	PF18768, MF_00994, NF008756, COG5010	NA	NA
UHGV-0049355_6	PHROG	phrog_38135	NA	unknown function
UHGV-0049355_6	UniRef90	UniRef90_A0A355JE23	NA	NA
UHGV-0049355_6	eggNOG-mapper	877421.AUJT01000010_gene539	NA	NA
UHGV-0049355_7	Pfam	PF14020	NA	DUF4236
UHGV-0049355_7	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0049355_8	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0049355_8	UniRef90	UniRef90_A0A1C6GF39	Host cell surface-exposed lipoprotein	NA
UHGV-0049355_8	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-0049355_8	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0049355_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0049355_9	PHROG	phrog_87	metallo-protease	other
UHGV-0049355_9	UniRef90	UniRef90_A0A7X9BSM0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0049355_9	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0049355_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0049355_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0049355_10	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0049355_10	UniRef90	UniRef90_A0A1C6GF80	Predicted transcriptional regulator	NA
UHGV-0049355_10	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049355_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0049355_10	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0049355_11	UniRef90	UniRef90_UPI00164C9F56	helix-turn-helix domain-containing protein	NA
UHGV-0049355_11	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-0049355_11	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0049355_13	Structural annotation	MF_00273	NA	NA
UHGV-0049355_16	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0049355_16	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0049355_16	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0049355_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0049355_16	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0049355_19	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0049355_19	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0049355_19	UniRef90	UniRef90_A0A1C6GFL6	Exodeoxyribonuclease 8	NA
UHGV-0049355_19	eggNOG-mapper	641147.HMPREF9021_02702	NA	NA
UHGV-0049355_19	Pfam	PF12684	NA	DUF3799
UHGV-0049355_19	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0049355_19	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0049355_20	PHROG	phrog_3657	NA	unknown function
UHGV-0049355_20	eggNOG-mapper	1029823.AFIE01000083_gene3592	NA	NA
UHGV-0049355_21	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0049355_21	UniRef90	UniRef90_A0A1C6GFR4	Hef nuclease	NA
UHGV-0049355_21	eggNOG-mapper	887325.HMPREF0381_0094	NA	NA
UHGV-0049355_21	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0049355_21	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0049355_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049355_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049355_22	UniRef90	UniRef90_A0A1C6GFU4	Single-stranded DNA-binding protein	NA
UHGV-0049355_22	eggNOG-mapper	641112.ACOK01000080_gene3234	Single-stranded DNA-binding protein	NA
UHGV-0049355_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049355_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0049355_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049355_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0049355_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0049355_23	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0049355_23	UniRef90	UniRef90_A0A1C6GFP7	NA	NA
UHGV-0049355_23	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-0049355_23	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0049355_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0049355_23	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0049355_26	Structural annotation	TIGR01636	NA	NA
UHGV-0049355_28	Structural annotation	PF15968	NA	NA
UHGV-0049355_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049355_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0049355_29	UniRef90	UniRef90_A0A1C6GFY7	Phage terminase, large subunit, PBSX family	NA
UHGV-0049355_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0049355_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0049355_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0049355_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0049355_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0049355_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049355_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0049355_30	UniRef90	UniRef90_A0A1C6GG74	Phage portal protein, putative, A118 family	NA
UHGV-0049355_30	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0049355_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049355_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0049355_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0049355_31	UniRef90	UniRef90_A0A1C6GGW2	Phage minor capsid protein 2	NA
UHGV-0049355_31	eggNOG-mapper	1151292.QEW_4539	NA	NA
UHGV-0049355_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0049355_31	COG	COG2369	NA	NA
UHGV-0049355_31	Structural annotation	PF06152	NA	NA
UHGV-0049355_33	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA
UHGV-0049355_34	PHROG	phrog_774	NA	unknown function
UHGV-0049355_34	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0049355_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0049355_35	UniRef90	UniRef90_A0A1C6GGD5	Phage minor structural protein GP20	NA
UHGV-0049355_35	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0049355_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0049355_35	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0049355_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0049355_36	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0049355_36	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0049355_36	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0049355_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0049355_37	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0049355_38	Pfam	PF20536	NA	DUF6751
UHGV-0049355_38	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0049355_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0049355_39	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-0049355_39	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0049355_39	Structural annotation	PF11114	NA	NA
UHGV-0049355_40	PHROG	phrog_3266	tail completion	connector
UHGV-0049355_41	PHROG	phrog_3099	NA	unknown function
UHGV-0049355_41	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0049355_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0049355_43	PHROG	phrog_706	NA	unknown function
UHGV-0049355_43	UniRef90	UniRef90_A0A1C6GGT7	Bacteriophage Gp15 protein	NA
UHGV-0049355_43	eggNOG-mapper	1300150.EMQU_2490	Bacteriophage Gp15 protein	NA
UHGV-0049355_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0049355_43	Structural annotation	PF06854	NA	NA
UHGV-0049355_44	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0049355_44	UniRef90	UniRef90_A0A1C6GH83	Phage-related minor tail protein	NA
UHGV-0049355_44	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0049355_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0049355_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0049355_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0049355_44	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0049355_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0049355_46	Structural annotation	PF05954, NF033848, COG4379	NA	NA
UHGV-0049355_49	PHROG	phrog_199	holin	lysis
UHGV-0049355_49	UniRef90	UniRef90_A0A1C6GH21	Phage-related holin (Lysis protein)	NA
UHGV-0049355_49	eggNOG-mapper	642492.Clole_0759	toxin secretion phage lysis holin	NA
UHGV-0049355_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0049355_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0049355_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0049355_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0049355_50	KOfam	K07273	acm; lysozyme	NA
UHGV-0049355_50	PHROG	phrog_291	endolysin	lysis
UHGV-0049355_50	UniRef90	UniRef90_A0A1C6GH19	Autolytic lysozyme	NA
UHGV-0049355_50	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0049355_50	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0049355_50	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0049355_50	Structural annotation	PF01183, NF002575, COG3757	NA	NA