UHGV-0049382

Genome information

Genome length 42,194 bps

CDS count 65

Completeness 93.98% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049382
vOTU ID	vOTU-070772
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_23747
BioSample	SAMEA2042406
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.08
Jumbo phage	No

Genome content
Genome length	42,194 bps
GC content	45.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.85%
Average CDS length	606.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049382_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0049382_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0049382_1	UniRef90	UniRef90_R6N1X8	DNA integration/recombination protein	NA
UHGV-0049382_1	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0049382_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0049382_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0049382_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0049382_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0049382_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0049382_2	UniRef90	UniRef90_A0A1C6L0N4	HTH cro/C1-type domain-containing protein	NA
UHGV-0049382_2	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0049382_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0049382_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0049382_3	UniRef90	UniRef90_R6P523	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0049382_3	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0049382_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049382_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0049382_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0049382_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0049382_4	UniRef90	UniRef90_R6MZ46	Conserved domain protein	NA
UHGV-0049382_4	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0049382_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0049382_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0049382_5	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0049382_5	PHROG	phrog_19349	NA	unknown function
UHGV-0049382_5	UniRef90	UniRef90_R6N9M0	Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains)	NA
UHGV-0049382_5	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-0049382_5	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0049382_5	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0049382_5	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0049382_7	UniRef90	UniRef90_R6NFS2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-0049382_7	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-0049382_7	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0049382_8	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0049382_8	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0049382_8	UniRef90	UniRef90_R6P528	DNA or RNA helicases of superfamily II	NA
UHGV-0049382_8	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0049382_8	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0049382_8	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0049382_8	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0049382_8	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0049382_8	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0049382_9	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0049382_9	eggNOG-mapper	1235797.C816_01664	COG NOG12663 non supervised orthologous group	NA
UHGV-0049382_9	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0049382_10	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0049382_10	UniRef90	UniRef90_R6MZ51	DNA polymerase elongation subunit (Family B)	NA
UHGV-0049382_10	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0049382_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0049382_10	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0049382_10	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0049382_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049382_11	UniRef90	UniRef90_R6N9M4	Phage-related protein predicted endonuclease	NA
UHGV-0049382_11	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0049382_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0049382_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0049382_11	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0049382_13	AcrCatalog	cluster_73853	NA	NA
UHGV-0049382_14	Structural annotation	PF05037	NA	NA
UHGV-0049382_15	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0049382_15	UniRef90	UniRef90_R6MZ55	NA	NA
UHGV-0049382_15	eggNOG-mapper	1297570.MESS4_510075	NA	NA
UHGV-0049382_15	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0049382_15	Structural annotation	PF18909	NA	NA
UHGV-0049382_16	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0049382_16	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0049382_16	UniRef90	UniRef90_A0A1C6EYG8	Predicted HD-superfamily hydrolase	NA
UHGV-0049382_16	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0049382_16	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0049382_16	Structural annotation	MF_01427, NF010007, COG3481	NA	NA
UHGV-0049382_19	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0049382_20	Structural annotation	PF17399	NA	NA
UHGV-0049382_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0049382_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0049382_21	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0049382_21	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0049382_21	Structural annotation	PF14354	NA	NA
UHGV-0049382_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0049382_28	UniRef90	UniRef90_UPI001C3EDFA5	class I SAM-dependent methyltransferase	NA
UHGV-0049382_28	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0049382_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0049382_28	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0049382_28	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0049382_30	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0049382_30	UniRef90	UniRef90_R6P545	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase N-terminal	NA
UHGV-0049382_30	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0049382_30	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0049382_30	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0049382_30	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0049382_31	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0049382_31	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0049382_31	UniRef90	UniRef90_R6MZ76	Flavin-dependent thymidylate synthase	NA
UHGV-0049382_31	eggNOG-mapper	665956.HMPREF1032_03153	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0049382_31	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0049382_31	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0049382_31	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0049382_31	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0049382_31	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0049382_32	PHROG	phrog_1233	NA	unknown function
UHGV-0049382_32	UniRef90	UniRef90_UPI001D077F84	basic secretory family protein	NA
UHGV-0049382_32	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0049382_34	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0049382_34	UniRef90	UniRef90_R6NFT7	Phage/plasmid primase P4 family C-terminal domain	NA
UHGV-0049382_34	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0049382_34	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0049382_34	Pfam	PF19263	NA	DUF5906
UHGV-0049382_34	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0049382_34	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0049382_34	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0049382_34	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0049382_35	PHROG	phrog_7880	NA	unknown function
UHGV-0049382_35	eggNOG-mapper	330084.JNYZ01000003_gene2313	NA	NA
UHGV-0049382_41	PHROG	phrog_4264	NA	unknown function
UHGV-0049382_44	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0049382_46	UniRef90	UniRef90_R6P559	DNA-binding helix-turn-helix protein	NA
UHGV-0049382_46	eggNOG-mapper	748727.CLJU_c03300	NA	NA
UHGV-0049382_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049382_46	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0049382_47	Structural annotation	PF11337	NA	NA
UHGV-0049382_48	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0049382_48	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0049382_48	UniRef90	UniRef90_R6N9Q2	Resolvase	NA
UHGV-0049382_48	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-0049382_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0049382_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0049382_48	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0049382_50	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0049382_50	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0049382_50	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0049382_50	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0049382_50	COG	COG5410	NA	NA
UHGV-0049382_50	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0049382_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0049382_51	UniRef90	UniRef90_R6P563	SPP1 family phage portal protein	NA
UHGV-0049382_51	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0049382_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049382_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0049382_53	PHROG	phrog_544	major head protein	head and packaging
UHGV-0049382_53	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0049382_53	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0049382_53	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0049382_54	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0049382_54	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0049382_54	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0049382_54	Structural annotation	TIGR01560	NA	NA
UHGV-0049382_55	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0049382_56	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0049382_56	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0049382_57	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-0049382_57	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0049382_58	PHROG	phrog_158	major tail protein	tail
UHGV-0049382_58	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0049382_58	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0049382_58	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0049382_59	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0049382_59	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0049382_59	Pfam	PF16478	NA	DUF5055
UHGV-0049382_59	Structural annotation	PF16478	NA	NA
UHGV-0049382_60	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0049382_61	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0049382_61	eggNOG-mapper	428125.CLOLEP_01422	phage tail tape measure protein	NA
UHGV-0049382_61	COG	COG5412	Phage-related protein	NA
UHGV-0049382_62	PHROG	phrog_1194	NA	unknown function
UHGV-0049382_62	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0049382_62	Pfam	PF20458	NA	DUF6711
UHGV-0049382_62	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0049382_63	PHROG	phrog_13879	NA	unknown function
UHGV-0049382_63	eggNOG-mapper	1304866.K413DRAFT_0774	NA	NA
UHGV-0049382_63	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0049382_64	PHROG	phrog_18725	NA	unknown function
UHGV-0049382_64	eggNOG-mapper	665956.HMPREF1032_02705	NA	NA
UHGV-0049382_65	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA