UHGV-0049465

Genome information

Genome length 49,368 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049465
vOTU ID	vOTU-070948
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127
BioSample	SAMD00036400
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.76
Jumbo phage	No

Genome content
Genome length	49,368 bps
GC content	45.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	87.37%
Average CDS length	628.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049465_1	PHROG	phrog_5867	endolysin	lysis
UHGV-0049465_1	UniRef90	UniRef90_A0A8B0KGQ0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049465_1	eggNOG-mapper	1262914.BN533_02173	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049465_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0049465_2	KOfam	K14059	int; integrase	NA
UHGV-0049465_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0049465_2	UniRef90	UniRef90_R6X1Y3	Tyr recombinase domain-containing protein	NA
UHGV-0049465_2	eggNOG-mapper	1123250.KB908381_gene1631	Belongs to the 'phage' integrase family	NA
UHGV-0049465_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049465_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049465_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0049465_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0049465_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049465_4	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0049465_4	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-0049465_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049465_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049465_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0049465_7	PHROG	phrog_6058	NA	unknown function
UHGV-0049465_7	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0049465_7	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0049465_7	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0049465_8	Structural annotation	NF041909	NA	NA
UHGV-0049465_9	PHROG	phrog_14367	NA	unknown function
UHGV-0049465_9	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0049465_9	eggNOG-mapper	397291.C804_02419	LysM domain	NA
UHGV-0049465_9	Pfam	PF01476	LysM domain	LysM
UHGV-0049465_9	COG	COG1388	LysM repeat	NA
UHGV-0049465_9	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0049465_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049465_11	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0049465_11	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0049465_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0049465_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0049465_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0049465_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0049465_12	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-0049465_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049465_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049465_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0049465_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049465_13	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0049465_13	eggNOG-mapper	525257.HMPREF0204_11404	RecT family	NA
UHGV-0049465_13	Pfam	PF03837	RecT family	RecT
UHGV-0049465_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0049465_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0049465_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0049465_15	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0049465_15	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0049465_15	eggNOG-mapper	1033737.CAEV01000029_gene310	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0049465_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0049465_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0049465_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0049465_15	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0049465_19	PHROG	phrog_10714	NA	unknown function
UHGV-0049465_19	Structural annotation	PF21173	NA	NA
UHGV-0049465_20	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0049465_20	PHROG	phrog_923	NA	unknown function
UHGV-0049465_20	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0049465_20	Pfam	PF13599	Pentapeptide repeats (9 copies)	Pentapeptide_4
UHGV-0049465_21	PHROG	phrog_2776	NA	unknown function
UHGV-0049465_21	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0049465_21	Pfam	PF06319	DNA repair protein MmcB-like	MmcB-like
UHGV-0049465_21	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0049465_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0049465_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049465_23	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0049465_23	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-0049465_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0049465_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0049465_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0049465_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049465_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049465_24	UniRef90	UniRef90_R6WGR4	Single-stranded DNA-binding protein	NA
UHGV-0049465_24	eggNOG-mapper	546268.NEISUBOT_05135	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0049465_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049465_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0049465_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049465_24	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0049465_33	PHROG	phrog_15863	NA	unknown function
UHGV-0049465_33	UniRef90	UniRef90_R6WLL6	Cytochrome c domain-containing protein	NA
UHGV-0049465_33	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0049465_33	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0049465_34	UniRef90	UniRef90_UPI00103300F2	helix-turn-helix domain-containing protein	NA
UHGV-0049465_34	eggNOG-mapper	1050201.KB913034_gene791	NA	NA
UHGV-0049465_34	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0049465_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049465_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0049465_36	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0049465_36	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-0049465_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0049465_36	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0049465_36	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0049465_38	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0049465_38	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0049465_38	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0049465_38	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0049465_38	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0049465_39	PHROG	phrog_528	NA	unknown function
UHGV-0049465_39	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0049465_40	PHROG	phrog_458	protease	other
UHGV-0049465_40	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0049465_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-0049465_41	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0049465_41	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0049465_41	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0049465_41	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049465_42	PHROG	phrog_427	NA	unknown function
UHGV-0049465_42	Structural annotation	PF21190	NA	NA
UHGV-0049465_43	PHROG	phrog_394	tail protein	tail
UHGV-0049465_43	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0049465_43	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-0049465_43	Structural annotation	PF17212	NA	NA
UHGV-0049465_44	PHROG	phrog_376	tail protein	tail
UHGV-0049465_44	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0049465_44	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0049465_44	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0049465_44	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0049465_45	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0049465_45	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0049465_46	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0049465_46	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0049465_46	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0049465_47	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0049465_47	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0049465_47	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0049465_48	PHROG	phrog_9880	NA	unknown function
UHGV-0049465_48	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0049465_48	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0049465_50	PHROG	phrog_1640	tail protein	tail
UHGV-0049465_50	UniRef90	UniRef90_A0A0U1KVM6	NA	NA
UHGV-0049465_50	eggNOG-mapper	1123288.SOV_1c10770	Right handed beta helix region	NA
UHGV-0049465_50	COG	COG5434	Polygalacturonase	NA
UHGV-0049465_50	Structural annotation	PF03906	NA	NA
UHGV-0049465_51	PHROG	phrog_9116	tail protein	tail
UHGV-0049465_51	UniRef90	UniRef90_A0A354WRB2	Collar domain-containing protein	NA
UHGV-0049465_51	eggNOG-mapper	556268.OFAG_01003	Phage Tail Collar Domain	NA
UHGV-0049465_51	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0049465_51	COG	COG4675	Phage tail collar domain	NA
UHGV-0049465_51	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0049465_52	PHROG	phrog_1807	tail fiber protein	tail
UHGV-0049465_52	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0049465_52	eggNOG-mapper	1408428.JNJP01000079_gene3366	NA	NA
UHGV-0049465_52	Pfam	PF14301	NA	DUF4376
UHGV-0049465_52	Structural annotation	PF14301	NA	NA
UHGV-0049465_53	PHROG	phrog_4105	NA	unknown function
UHGV-0049465_53	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0049465_55	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0049465_55	Structural annotation	PF21277	NA	NA
UHGV-0049465_58	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0049465_58	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0049465_58	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0049465_58	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-0049465_65	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0049465_65	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0049465_66	UniRef90	UniRef90_A0A3C1IK59	HTH_16 domain-containing protein	NA
UHGV-0049465_66	eggNOG-mapper	626939.HMPREF9443_01468	Sigma-70, region 4	NA
UHGV-0049465_66	Pfam	PF12645	Helix-turn-helix domain	HTH_16
UHGV-0049465_66	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0049465_67	KOfam	K15546	boxR, bzdR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0049465_67	UniRef90	UniRef90_R6XWX1	HTH cro/C1-type domain-containing protein	NA
UHGV-0049465_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049465_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049465_68	COG	COG1401	5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB	NA