UHGV-0049476

Genome information

Genome length 37,561 bps

CDS count 55

Completeness 99.44% (high-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049476
vOTU ID	vOTU-011075
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_130
BioSample	SAMD00036400
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.69
Jumbo phage	No

Genome content
Genome length	37,561 bps
GC content	34.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.35%
Average CDS length	633.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049476_1	KOfam	K14059	int; integrase	NA
UHGV-0049476_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0049476_1	UniRef90	UniRef90_G9QX55	Tyr recombinase domain-containing protein	NA
UHGV-0049476_1	eggNOG-mapper	445974.CLORAM_02973	Belongs to the 'phage' integrase family	NA
UHGV-0049476_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049476_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049476_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0049476_2	UniRef90	UniRef90_UPI001CCEA9A9	PBECR4 domain-containing protein	NA
UHGV-0049476_2	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-0049476_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0049476_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0049476_4	UniRef90	UniRef90_G9QX61	HTH cro/C1-type domain-containing protein	NA
UHGV-0049476_4	eggNOG-mapper	552396.HMPREF0863_02447	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0049476_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049476_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0049476_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0049476_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0049476_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0049476_5	UniRef90	UniRef90_G9QX62	HTH cro/C1-type domain-containing protein	NA
UHGV-0049476_5	eggNOG-mapper	642492.Clole_1473	sequence-specific DNA binding	NA
UHGV-0049476_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049476_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049476_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0049476_10	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049476_10	UniRef90	UniRef90_A0A415ZXZ0	NA	NA
UHGV-0049476_10	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0049476_10	Structural annotation	COG2250	NA	NA
UHGV-0049476_11	UniRef90	UniRef90_A0A415XFB8	DNA-binding protein	NA
UHGV-0049476_17	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0049476_17	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049476_17	UniRef90	UniRef90_UPI001BA7CECE	AAA family ATPase	NA
UHGV-0049476_17	eggNOG-mapper	445974.CLORAM_02956	nuclear chromosome segregation	NA
UHGV-0049476_17	Pfam	PF13476	AAA domain	AAA_23
UHGV-0049476_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0049476_17	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0049476_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0049476_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049476_18	UniRef90	UniRef90_B0N8M1	Recombinase, phage RecT family	NA
UHGV-0049476_18	Pfam	PF03837	RecT family	RecT
UHGV-0049476_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0049476_19	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0049476_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0049476_19	UniRef90	UniRef90_UPI000C1C2F33	MBL fold metallo-hydrolase	NA
UHGV-0049476_19	eggNOG-mapper	445974.CLORAM_02954	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0049476_19	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0049476_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0049476_19	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0049476_20	eggNOG-mapper	991905.SL003B_3762	NA	NA
UHGV-0049476_21	PHROG	phrog_1029	NA	unknown function
UHGV-0049476_21	eggNOG-mapper	445974.CLORAM_02952	NA	NA
UHGV-0049476_21	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0049476_22	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0049476_22	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0049476_23	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0049476_23	UniRef90	UniRef90_A0A3E3EH62	POU-specific domain-containing protein	NA
UHGV-0049476_23	eggNOG-mapper	445974.CLORAM_02950	NA	NA
UHGV-0049476_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049476_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049476_25	UniRef90	UniRef90_A0A3E3EGF2	Single-stranded DNA-binding protein	NA
UHGV-0049476_25	eggNOG-mapper	445974.CLORAM_02948	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0049476_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049476_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0049476_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049476_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0049476_25	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0049476_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049476_26	UniRef90	UniRef90_UPI000C817A46	NA	NA
UHGV-0049476_26	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0049476_26	Pfam	PF06356	NA	DUF1064
UHGV-0049476_26	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0049476_27	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049476_27	UniRef90	UniRef90_A0A3E3ABQ3	HNH endonuclease	NA
UHGV-0049476_27	eggNOG-mapper	999413.HMPREF1094_04725	NA	NA
UHGV-0049476_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0049476_27	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0049476_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049476_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0049476_28	Structural annotation	PF04545, TIGR01636, COG2739	NA	NA
UHGV-0049476_29	PHROG	phrog_3675	NA	unknown function
UHGV-0049476_29	UniRef90	UniRef90_UPI001CDBACA2	YjcQ family protein	NA
UHGV-0049476_29	eggNOG-mapper	1292035.H476_1021	YjcQ protein	NA
UHGV-0049476_29	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0049476_29	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0049476_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0049476_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0049476_30	UniRef90	UniRef90_B0N8K3	Terminase small subunit	NA
UHGV-0049476_30	eggNOG-mapper	445974.CLORAM_02937	Terminase small subunit	NA
UHGV-0049476_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0049476_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0049476_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049476_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0049476_31	UniRef90	UniRef90_B0N8K2	Phage terminase, large subunit, PBSX family	NA
UHGV-0049476_31	eggNOG-mapper	445974.CLORAM_02936	Phage terminase, large subunit, PBSX family	NA
UHGV-0049476_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0049476_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0049476_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0049476_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0049476_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049476_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0049476_32	UniRef90	UniRef90_B0N8K1	Phage portal protein, SPP1 family	NA
UHGV-0049476_32	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0049476_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049476_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0049476_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0049476_33	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0049476_33	UniRef90	UniRef90_G9QX91	Phage_Mu_F domain-containing protein	NA
UHGV-0049476_33	eggNOG-mapper	445974.CLORAM_02934	Phage Mu protein F like protein	NA
UHGV-0049476_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0049476_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0049476_33	COG	COG2369	NA	NA
UHGV-0049476_33	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0049476_34	eggNOG-mapper	445974.CLORAM_02933	NA	NA
UHGV-0049476_34	Structural annotation	PF20111	NA	NA
UHGV-0049476_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0049476_36	UniRef90	UniRef90_A0A417IN83	NA	NA
UHGV-0049476_36	eggNOG-mapper	445974.CLORAM_02931	NA	NA
UHGV-0049476_36	Pfam	PF14265	NA	DUF4355
UHGV-0049476_36	Structural annotation	PF14265	NA	NA
UHGV-0049476_37	PHROG	phrog_267	major head protein	head and packaging
UHGV-0049476_37	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-0049476_37	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0049476_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0049476_38	UniRef90	UniRef90_A0A1C5TAF6	Rho termination factor, N-terminal domain	NA
UHGV-0049476_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0049476_39	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-0049476_39	eggNOG-mapper	445974.CLORAM_02928	Phage gp6-like head-tail connector protein	NA
UHGV-0049476_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0049476_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0049476_40	PHROG	phrog_2168	NA	unknown function
UHGV-0049476_40	eggNOG-mapper	445974.CLORAM_02927	NA	NA
UHGV-0049476_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0049476_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0049476_41	UniRef90	UniRef90_B0N8J2	Phage protein, HK97 gp10 family	NA
UHGV-0049476_41	eggNOG-mapper	445974.CLORAM_02926	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0049476_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0049476_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0049476_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0049476_42	PHROG	phrog_78	tail terminator	connector
UHGV-0049476_42	eggNOG-mapper	445974.CLORAM_02925	NA	NA
UHGV-0049476_42	Structural annotation	PF05657	NA	NA
UHGV-0049476_43	PHROG	phrog_158	major tail protein	tail
UHGV-0049476_43	UniRef90	UniRef90_A0A1C5TB95	Phage tail protein	NA
UHGV-0049476_43	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0049476_43	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0049476_44	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0049476_44	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-0049476_44	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0049476_44	Pfam	PF19591	NA	DUF6096
UHGV-0049476_44	Structural annotation	PF19591	NA	NA
UHGV-0049476_45	eggNOG-mapper	445974.CLORAM_02922	NA	NA
UHGV-0049476_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0049476_46	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-0049476_46	eggNOG-mapper	445974.CLORAM_02921	tape measure	NA
UHGV-0049476_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0049476_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0049476_47	PHROG	phrog_1194	NA	unknown function
UHGV-0049476_47	eggNOG-mapper	445974.CLORAM_02920	NA	NA
UHGV-0049476_47	Pfam	PF20458	NA	DUF6711
UHGV-0049476_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0049476_48	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0049476_48	PHROG	phrog_819	tail protein	tail
UHGV-0049476_48	UniRef90	UniRef90_G9QXA6	Ig-like domain-containing protein	NA
UHGV-0049476_48	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0049476_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0049476_48	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0049476_49	PHROG	phrog_372	tail protein	tail
UHGV-0049476_49	UniRef90	UniRef90_UPI000E5CC2C3	NA	NA
UHGV-0049476_49	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0049476_49	Pfam	PF05895	NA	DUF859
UHGV-0049476_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0049476_49	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0049476_50	Structural annotation	PF12961, MF_00771, NF002617, COG3215	NA	NA
UHGV-0049476_51	PHROG	phrog_10091	holin	lysis
UHGV-0049476_51	UniRef90	UniRef90_A0A7U9CEZ0	Phage phi LC3 family holin	NA
UHGV-0049476_51	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0049476_51	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0049476_51	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0049476_51	COG	COG5546	NA	NA
UHGV-0049476_51	Structural annotation	COG5546	NA	NA
UHGV-0049476_52	PHROG	phrog_1863	NA	unknown function
UHGV-0049476_52	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-0049476_53	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0049476_53	UniRef90	UniRef90_A0A416DTG4	SH3 domain-containing protein	NA
UHGV-0049476_53	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0049476_53	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0049476_53	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0049476_55	UniRef90	UniRef90_A0A7U9GPK7	SH3b domain-containing protein	NA
UHGV-0049476_55	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0049476_55	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA