UHGV-0049553

Genome information

vOTU vOTU-019891

Genome length 30,631 bps

CDS count 45

Completeness 69.70% (medium-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049553
vOTU ID	vOTU-019891
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_21815
BioSample	SAMEA2042507
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.33
Jumbo phage	No

Genome content
Genome length	30,631 bps
GC content	44.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.36%
Average CDS length	633.40 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049553_1	PHROG	phrog_16228	NA	unknown function
UHGV-0049553_1	UniRef90	UniRef90_A0A3R6MW99	Uma2 family endonuclease	NA
UHGV-0049553_1	eggNOG-mapper	478749.BRYFOR_07230	Putative restriction endonuclease	NA
UHGV-0049553_1	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0049553_1	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0049553_3	PHROG	phrog_19315	NA	unknown function
UHGV-0049553_3	UniRef90	UniRef90_A0A373CQP6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0049553_3	eggNOG-mapper	883156.HMPREF9282_00920	NA	NA
UHGV-0049553_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0049553_3	COG	COG1592	Rubrerythrin	NA
UHGV-0049553_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0049553_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0049553_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049553_4	UniRef90	UniRef90_A0A173UJ90	Helix-turn-helix domain	NA
UHGV-0049553_4	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049553_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049553_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049553_5	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-0049553_5	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0049553_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0049553_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0049553_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0049553_7	UniRef90	UniRef90_A0A373CW16	Phage antirepressor Ant	NA
UHGV-0049553_7	eggNOG-mapper	1216932.CM240_1409	Phage antirepressor protein	NA
UHGV-0049553_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0049553_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0049553_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0049553_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0049553_9	PHROG	phrog_9607	NA	unknown function
UHGV-0049553_9	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0049553_9	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0049553_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0049553_12	PHROG	phrog_1499	NA	unknown function
UHGV-0049553_12	UniRef90	UniRef90_A0A174PNZ4	SMC domain-containing protein	NA
UHGV-0049553_12	eggNOG-mapper	610130.Closa_1366	domain protein	NA
UHGV-0049553_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-0049553_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0049553_12	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0049553_13	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049553_13	UniRef90	UniRef90_A0A396KBA8	AP2 domain-containing protein	NA
UHGV-0049553_13	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0049553_13	Structural annotation	PF17375	NA	NA
UHGV-0049553_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049553_14	UniRef90	UniRef90_A0A6M5G6X7	ATP-binding protein	NA
UHGV-0049553_14	eggNOG-mapper	610130.Closa_1367	AAA domain	NA
UHGV-0049553_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0049553_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0049553_15	PHROG	phrog_2698	NA	unknown function
UHGV-0049553_15	UniRef90	UniRef90_UPI0008CB70C8	NA	NA
UHGV-0049553_15	eggNOG-mapper	608534.GCWU000341_02311	NA	NA
UHGV-0049553_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0049553_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0049553_16	UniRef90	UniRef90_A0A1I0J5V3	Superfamily II DNA or RNA helicase	NA
UHGV-0049553_16	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-0049553_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0049553_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0049553_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0049553_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0049553_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0049553_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0049553_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0049553_17	UniRef90	UniRef90_A0A1I0J5U4	PriCT_2 domain-containing protein	NA
UHGV-0049553_17	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-0049553_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0049553_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-0049553_17	COG	COG3598	RecA-family ATPase	NA
UHGV-0049553_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0049553_19	PHROG	phrog_16687	NA	unknown function
UHGV-0049553_19	eggNOG-mapper	1214217.ALNF01000014_gene1395	NA	NA
UHGV-0049553_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0049553_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049553_20	UniRef90	UniRef90_A0A416KE46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0049553_20	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0049553_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0049553_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0049553_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0049553_22	Structural annotation	PF01246, MF_00773, NF041909, COG2075	NA	NA
UHGV-0049553_23	PHROG	phrog_11237	NA	unknown function
UHGV-0049553_23	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0049553_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0049553_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049553_24	UniRef90	UniRef90_A0A416C0F0	Helix-turn-helix domain-containing protein	NA
UHGV-0049553_24	eggNOG-mapper	397291.C804_01124	sequence-specific DNA binding	NA
UHGV-0049553_24	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0049553_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049553_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049553_24	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0049553_25	UniRef90	UniRef90_A0A7X5DAV1	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0049553_25	Pfam	PF05534	HicB family	HicB
UHGV-0049553_25	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0049553_26	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0049553_26	UniRef90	UniRef90_A0A396Q4H5	Bro-N domain-containing protein	NA
UHGV-0049553_26	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0049553_26	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0049553_26	COG	COG3617	Prophage antirepressor	NA
UHGV-0049553_26	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0049553_28	PHROG	phrog_9659	NA	unknown function
UHGV-0049553_28	UniRef90	UniRef90_UPI000A26FDC2	NA	NA
UHGV-0049553_29	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0049553_29	UniRef90	UniRef90_UPI0009D78BBE	phage terminase small subunit	NA
UHGV-0049553_29	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0049553_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0049553_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0049553_29	COG	COG5484	NA	NA
UHGV-0049553_29	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0049553_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049553_30	PHROG	phrog_10250	NA	unknown function
UHGV-0049553_30	UniRef90	UniRef90_A0A3A6KHT5	PBSX family phage terminase large subunit	NA
UHGV-0049553_30	eggNOG-mapper	1211817.CCAT010000003_gene241	phage terminase, large subunit, PBSX family	NA
UHGV-0049553_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0049553_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0049553_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0049553_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0049553_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0049553_31	KOfam	K09961	NA	NA
UHGV-0049553_31	PHROG	phrog_146	portal protein	head and packaging
UHGV-0049553_31	UniRef90	UniRef90_A0A373CTT3	NA	NA
UHGV-0049553_31	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0049553_31	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0049553_31	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0049553_31	COG	COG3567	NA	NA
UHGV-0049553_31	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0049553_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0049553_32	UniRef90	UniRef90_A0A416C0J8	Minor capsid protein	NA
UHGV-0049553_32	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0049553_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0049553_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0049553_32	Structural annotation	PF06152	NA	NA
UHGV-0049553_33	PHROG	phrog_35328	NA	unknown function
UHGV-0049553_34	KOfam	K09960	NA	NA
UHGV-0049553_34	PHROG	phrog_16985	NA	unknown function
UHGV-0049553_34	UniRef90	UniRef90_A0A3R6PR76	NA	NA
UHGV-0049553_34	eggNOG-mapper	1196322.A370_02033	NA	NA
UHGV-0049553_34	Pfam	PF09979	NA	DUF2213
UHGV-0049553_34	COG	COG3566	NA	NA
UHGV-0049553_34	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0049553_35	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0049553_35	UniRef90	UniRef90_UPI00164A2541	head fiber protein	NA
UHGV-0049553_35	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-0049553_35	Structural annotation	PF09956	NA	NA
UHGV-0049553_36	PHROG	phrog_264	major head protein	head and packaging
UHGV-0049553_36	UniRef90	UniRef90_A0A3A6KBH3	NA	NA
UHGV-0049553_36	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-0049553_36	Pfam	PF09950	NA	DUF2184
UHGV-0049553_36	COG	COG4834	NA	NA
UHGV-0049553_36	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0049553_38	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0049553_38	UniRef90	UniRef90_A0A373CYF1	NA	NA
UHGV-0049553_38	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-0049553_38	Pfam	PF13262	NA	DUF4054
UHGV-0049553_38	Structural annotation	PF13262	NA	NA
UHGV-0049553_39	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0049553_39	eggNOG-mapper	1089548.KI783301_gene2613	NA	NA
UHGV-0049553_39	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0049553_40	UniRef90	UniRef90_A0A373CZD5	HK97 gp10 family phage protein	NA
UHGV-0049553_40	eggNOG-mapper	398512.JQKC01000053_gene2530	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0049553_40	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0049553_41	PHROG	phrog_525	NA	unknown function
UHGV-0049553_41	eggNOG-mapper	526218.Sterm_1435	NA	NA
UHGV-0049553_41	Pfam	PF20765	NA	DUF6838
UHGV-0049553_41	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0049553_43	PHROG	phrog_279	tail sheath	tail
UHGV-0049553_43	UniRef90	UniRef90_A0A373CW72	Phage tail sheath protein	NA
UHGV-0049553_43	eggNOG-mapper	1163671.JAGI01000002_gene3054	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0049553_43	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0049553_43	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0049553_43	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0049553_43	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0049553_44	PHROG	phrog_365	tail protein	tail
UHGV-0049553_44	UniRef90	UniRef90_A0A1C5M0P8	Phage-like element PBSX protein xkdM	NA
UHGV-0049553_44	eggNOG-mapper	1163671.JAGI01000002_gene3053	Phage tail tube protein	NA
UHGV-0049553_44	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0049553_44	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0049553_45	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0049553_45	UniRef90	UniRef90_A0A354IBX8	Phage portal protein	NA
UHGV-0049553_45	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0049553_45	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0049553_45	Structural annotation	PF08890, COG4518	NA	NA