UHGV-0049558

Genome information

Genome length 37,675 bps

CDS count 53

Completeness 89.05% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049558
vOTU ID	vOTU-011410
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_21798
BioSample	SAMEA2042507
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.33
Jumbo phage	No

Genome content
Genome length	37,675 bps
GC content	38.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.00%
Average CDS length	672.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049558_1	PHROG	phrog_14105	NA	unknown function
UHGV-0049558_1	UniRef90	UniRef90_UPI001D11F597	pentapeptide repeat-containing protein	NA
UHGV-0049558_1	eggNOG-mapper	742740.HMPREF9474_02378	dextransucrase activity	NA
UHGV-0049558_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0049558_2	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0049558_2	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0049558_2	UniRef90	UniRef90_A0A849XTM5	DEAD/DEAH box helicase	NA
UHGV-0049558_2	eggNOG-mapper	742740.HMPREF9474_02377	snf2 family	NA
UHGV-0049558_2	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0049558_2	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0049558_2	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0049558_2	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0049558_4	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049558_4	UniRef90	UniRef90_A0A374DRX3	VRR-NUC domain-containing protein	NA
UHGV-0049558_4	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-0049558_4	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0049558_4	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0049558_5	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0049558_5	PHROG	phrog_5889	NA	unknown function
UHGV-0049558_5	UniRef90	UniRef90_UPI001C01F314	HD domain-containing protein	NA
UHGV-0049558_5	eggNOG-mapper	742740.HMPREF9474_02372	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0049558_5	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0049558_5	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0049558_8	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049558_8	UniRef90	UniRef90_UPI001C017367	ATP-binding protein	NA
UHGV-0049558_8	eggNOG-mapper	742740.HMPREF9474_02369	AAA domain	NA
UHGV-0049558_8	Structural annotation	PF13479, MF_00350, TIGR01618, COG2087	NA	NA
UHGV-0049558_9	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049558_9	UniRef90	UniRef90_A0A374E7W5	NA	NA
UHGV-0049558_9	eggNOG-mapper	742740.HMPREF9474_02367	NA	NA
UHGV-0049558_9	Pfam	PF05037	NA	DUF669
UHGV-0049558_9	Structural annotation	PF05037	NA	NA
UHGV-0049558_10	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0049558_10	UniRef90	UniRef90_A0A1G5G0M3	DNA polymerase	NA
UHGV-0049558_10	eggNOG-mapper	742740.HMPREF9474_02366	DNA polymerase elongation subunit (Family B)	NA
UHGV-0049558_10	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0049558_10	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0049558_11	Structural annotation	PF05384, NF041271, COG1579	NA	NA
UHGV-0049558_12	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0049558_12	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0049558_12	UniRef90	UniRef90_A0A374E6H3	DNA primase	NA
UHGV-0049558_12	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-0049558_12	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0049558_12	Pfam	PF19263	NA	DUF5906
UHGV-0049558_12	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0049558_12	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0049558_12	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0049558_12	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0049558_16	PHROG	phrog_6568	NA	unknown function
UHGV-0049558_16	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0049558_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049558_17	eggNOG-mapper	742740.HMPREF9474_02360	NA	NA
UHGV-0049558_17	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0049558_18	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0049558_18	UniRef90	UniRef90_UPI001177742A	phage terminase small subunit	NA
UHGV-0049558_18	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0049558_18	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0049558_18	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0049558_18	COG	COG5484	NA	NA
UHGV-0049558_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049558_19	PHROG	phrog_5902	NA	unknown function
UHGV-0049558_19	UniRef90	UniRef90_UPI001A922913	terminase B	NA
UHGV-0049558_19	eggNOG-mapper	1235800.C819_02240	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0049558_19	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0049558_19	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-0049558_20	PHROG	phrog_1233	NA	unknown function
UHGV-0049558_20	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0049558_20	Structural annotation	PF13058	NA	NA
UHGV-0049558_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0049558_21	UniRef90	UniRef90_A0A374E6B1	Phage portal protein	NA
UHGV-0049558_21	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0049558_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049558_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0049558_22	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0049558_22	UniRef90	UniRef90_A0A374E8T1	Phage_Mu_F domain-containing protein	NA
UHGV-0049558_22	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0049558_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0049558_22	COG	COG2369	NA	NA
UHGV-0049558_24	PHROG	phrog_918	NA	unknown function
UHGV-0049558_24	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0049558_24	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0049558_24	Pfam	PF19791	NA	DUF6275
UHGV-0049558_24	Structural annotation	PF19791	NA	NA
UHGV-0049558_25	PHROG	phrog_1048	NA	unknown function
UHGV-0049558_25	UniRef90	UniRef90_A0A416GZ68	NA	NA
UHGV-0049558_25	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0049558_25	Pfam	PF11195	NA	DUF2829
UHGV-0049558_25	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0049558_25	Structural annotation	PF11195	NA	NA
UHGV-0049558_26	Structural annotation	PF00041	NA	NA
UHGV-0049558_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0049558_27	UniRef90	UniRef90_UPI001373E5C4	phage scaffolding protein	NA
UHGV-0049558_27	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0049558_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0049558_27	Structural annotation	PF06810	NA	NA
UHGV-0049558_28	PHROG	phrog_247	major head protein	head and packaging
UHGV-0049558_28	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0049558_28	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0049558_28	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0049558_29	PHROG	phrog_1236	head protein	head and packaging
UHGV-0049558_29	eggNOG-mapper	1235800.C819_02232	NA	NA
UHGV-0049558_29	Structural annotation	PF05135	NA	NA
UHGV-0049558_30	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0049558_30	UniRef90	UniRef90_UPI00156E52AA	head-tail adaptor protein	NA
UHGV-0049558_30	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0049558_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0049558_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0049558_31	UniRef90	UniRef90_A0A415N123	HK97 gp10 family phage protein	NA
UHGV-0049558_31	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-0049558_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0049558_32	PHROG	phrog_957	head protein	head and packaging
UHGV-0049558_32	Structural annotation	PF12691	NA	NA
UHGV-0049558_33	PHROG	phrog_885	major tail protein	tail
UHGV-0049558_33	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-0049558_33	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0049558_35	PHROG	phrog_1021	NA	unknown function
UHGV-0049558_36	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0049558_36	UniRef90	UniRef90_A0A348Z0U7	Phage tail tape measure protein	NA
UHGV-0049558_36	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0049558_36	COG	COG1511	NA	NA
UHGV-0049558_36	Structural annotation	PF20155, COG5281	NA	NA
UHGV-0049558_37	UniRef90	UniRef90_A0A415MTE8	Phage tail protein	NA
UHGV-0049558_37	eggNOG-mapper	1280681.AUJZ01000049_gene369	NA	NA
UHGV-0049558_37	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0049558_38	PHROG	phrog_538	minor tail protein	tail
UHGV-0049558_38	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0049558_38	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0049558_38	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0049558_38	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0049558_39	PHROG	phrog_9994	NA	unknown function
UHGV-0049558_39	Structural annotation	PF20747	NA	NA
UHGV-0049558_40	PHROG	phrog_13589	NA	unknown function
UHGV-0049558_40	UniRef90	UniRef90_A0A7V5C4N3	NA	NA
UHGV-0049558_40	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0049558_40	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0049558_41	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0049558_41	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0049558_41	UniRef90	UniRef90_UPI00156E217C	Ig-like domain-containing protein	NA
UHGV-0049558_41	eggNOG-mapper	457415.HMPREF1006_01937	domain, Protein	NA
UHGV-0049558_41	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0049558_41	COG	COG5492	NA	NA
UHGV-0049558_42	Structural annotation	PF16323	NA	NA
UHGV-0049558_43	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-0049558_44	PHROG	phrog_18126	NA	unknown function
UHGV-0049558_45	PHROG	phrog_4105	NA	unknown function
UHGV-0049558_45	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0049558_46	PHROG	phrog_1129	holin	lysis
UHGV-0049558_46	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0049558_46	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0049558_46	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0049558_46	Structural annotation	PF16079	NA	NA
UHGV-0049558_47	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0049558_47	PHROG	phrog_2742	endolysin	lysis
UHGV-0049558_47	UniRef90	UniRef90_A0A3E4GMT7	MurNAc-LAA domain-containing protein	NA
UHGV-0049558_47	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049558_47	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0049558_47	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0049558_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049558_47	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-0049558_48	eggNOG-mapper	1123263.AUKY01000051_gene1085	NA	NA
UHGV-0049558_49	UniRef90	UniRef90_UPI0018AAE08D	NA	NA
UHGV-0049558_49	eggNOG-mapper	742765.HMPREF9457_01357	NA	NA
UHGV-0049558_49	Pfam	PF19552	NA	DUF6075
UHGV-0049558_50	UniRef90	UniRef90_A0A416VHW5	NA	NA
UHGV-0049558_50	eggNOG-mapper	411459.RUMOBE_03443	NA	NA
UHGV-0049558_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0049558_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0049558_51	UniRef90	UniRef90_A0A564T6L4	Sporulation initiation inhibitor protein Soj	NA
UHGV-0049558_51	eggNOG-mapper	411459.RUMOBE_03444	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0049558_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-0049558_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0049558_51	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0049558_52	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0049558_52	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0049558_52	UniRef90	UniRef90_A0A174LDE3	Nucleoid occlusion protein	NA
UHGV-0049558_52	eggNOG-mapper	742765.HMPREF9457_01354	ParB-like nuclease domain	NA
UHGV-0049558_52	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0049558_52	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0049558_52	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0049558_52	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0049558_53	eggNOG-mapper	411459.RUMOBE_02237	COG NOG34358 non supervised orthologous group	NA