UHGV-0049623

Genome information

Genome length 34,928 bps

CDS count 45

Completeness 99.90% (high-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049623
vOTU ID	vOTU-079541
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2443
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.55
Jumbo phage	No

Genome content
Genome length	34,928 bps
GC content	45.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.43%
Average CDS length	714.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049623_1	PHROG	phrog_1198	MutT/NUDIX hydrolase	other
UHGV-0049623_1	UniRef90	UniRef90_K6SH66	Hydrolase	NA
UHGV-0049623_1	eggNOG-mapper	543734.LCABL_09530	NUDIX domain	NA
UHGV-0049623_1	Pfam	PF00293	NUDIX domain	NUDIX
UHGV-0049623_1	COG	COG1051	ADP-ribose pyrophosphatase YjhB, NUDIX family	NA
UHGV-0049623_2	KOfam	K14059	int; integrase	NA
UHGV-0049623_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0049623_2	UniRef90	UniRef90_K0N9C2	Type I restriction modification DNA specificity domain protein	NA
UHGV-0049623_2	eggNOG-mapper	543734.LCABL_09550	Belongs to the 'phage' integrase family	NA
UHGV-0049623_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049623_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049623_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0049623_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0049623_3	UniRef90	UniRef90_UPI0012625AD4	Abi family protein	NA
UHGV-0049623_3	eggNOG-mapper	887929.HMP0721_1294	Abi-like protein	NA
UHGV-0049623_3	PADLOC	AbiD	AbiD	Abi
UHGV-0049623_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0049623_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0049623_3	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0049623_5	PHROG	phrog_31220	NA	unknown function
UHGV-0049623_5	eggNOG-mapper	1423734.JCM14202_421	NA	NA
UHGV-0049623_6	PHROG	phrog_37650	NA	unknown function
UHGV-0049623_6	eggNOG-mapper	568703.LGG_02700	NA	NA
UHGV-0049623_6	AcrCatalog	cluster_4442	NA	NA
UHGV-0049623_7	PHROG	phrog_87	metallo-protease	other
UHGV-0049623_7	UniRef90	UniRef90_K0N9C6	Peptidase_M78 domain-containing protein	NA
UHGV-0049623_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0049623_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0049623_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0049623_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049623_8	UniRef90	UniRef90_A0A829GN58	HTH cro/C1-type domain-containing protein	NA
UHGV-0049623_8	eggNOG-mapper	1127131.WEISSC39_00160	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0049623_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0049623_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049623_8	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0049623_9	UniRef90	UniRef90_A0A291IU31	XRE family transcriptional regulator	NA
UHGV-0049623_10	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0049623_10	UniRef90	UniRef90_A0A829GN52	ORF6N domain-containing protein	NA
UHGV-0049623_10	eggNOG-mapper	1423775.BAMN01000009_gene432	ORF6N domain	NA
UHGV-0049623_10	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0049623_10	COG	COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	NA
UHGV-0049623_10	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0049623_11	PHROG	phrog_823	NA	unknown function
UHGV-0049623_11	UniRef90	UniRef90_A0A291IU92	NA	NA
UHGV-0049623_11	eggNOG-mapper	543734.LCABL_09630	NA	NA
UHGV-0049623_11	Pfam	PF05595	NA	DUF771
UHGV-0049623_11	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0049623_12	PHROG	phrog_36466	NA	unknown function
UHGV-0049623_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049623_13	UniRef90	UniRef90_A0A826HGQ9	YqaJ domain-containing protein	NA
UHGV-0049623_13	eggNOG-mapper	543734.LCABL_09660	YqaJ-like viral recombinase domain	NA
UHGV-0049623_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0049623_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0049623_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0049623_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0049623_14	PHROG	phrog_29976	NA	unknown function
UHGV-0049623_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0049623_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049623_15	UniRef90	UniRef90_K6RP33	RecT family recombinational DNA repair protein	NA
UHGV-0049623_15	eggNOG-mapper	543734.LCABL_09680	RecT family	NA
UHGV-0049623_15	Pfam	PF03837	RecT family	RecT
UHGV-0049623_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0049623_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0049623_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0049623_16	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0049623_16	PHROG	phrog_38620	transcriptional regulator	transcription regulation
UHGV-0049623_16	UniRef90	UniRef90_A0A806L881	HTH cro/C1-type domain-containing protein	NA
UHGV-0049623_16	eggNOG-mapper	543734.LCABL_09690	Transcriptional regulator	NA
UHGV-0049623_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0049623_16	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0049623_16	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0049623_17	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0049623_17	UniRef90	UniRef90_UPI000CD0B8B6	DnaD domain protein	NA
UHGV-0049623_17	eggNOG-mapper	543734.LCABL_09700	Transcriptional regulator	NA
UHGV-0049623_17	Pfam	PF14502	Helix-turn-helix domain	HTH_41
UHGV-0049623_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0049623_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0049623_17	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0049623_17	Structural annotation	PF09681, NF033788, COG5529	NA	NA
UHGV-0049623_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0049623_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0049623_18	UniRef90	UniRef90_K6SBA8	Helicase loader	NA
UHGV-0049623_18	eggNOG-mapper	543734.LCABL_09710	IstB-like ATP binding protein	NA
UHGV-0049623_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0049623_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0049623_18	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0049623_19	PHROG	phrog_22102	NA	unknown function
UHGV-0049623_20	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0049623_20	UniRef90	UniRef90_K0N9N6	NA	NA
UHGV-0049623_20	eggNOG-mapper	543734.LCABL_11010	NA	NA
UHGV-0049623_21	PHROG	phrog_13069	NA	unknown function
UHGV-0049623_22	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049623_22	UniRef90	UniRef90_UPI000FF39836	HNH endonuclease	NA
UHGV-0049623_22	eggNOG-mapper	543734.LCABL_09750	HNH endonuclease	NA
UHGV-0049623_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0049623_22	Structural annotation	PF13392	NA	NA
UHGV-0049623_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049623_23	UniRef90	UniRef90_K0N9D8	Sigma70_r4 domain-containing protein	NA
UHGV-0049623_23	eggNOG-mapper	543734.LCABL_09790	NA	NA
UHGV-0049623_23	Structural annotation	PF04545, MF_00674, TIGR02984	NA	NA
UHGV-0049623_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0049623_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049623_25	UniRef90	UniRef90_K0N9P0	HNH domain-containing protein	NA
UHGV-0049623_25	eggNOG-mapper	543734.LCABL_09800	HNH endonuclease	NA
UHGV-0049623_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0049623_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0049623_26	PHROG	phrog_1066	NA	unknown function
UHGV-0049623_26	eggNOG-mapper	543734.LCABL_09810	NA	NA
UHGV-0049623_26	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0049623_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0049623_27	UniRef90	UniRef90_K0MU46	Phage terminase-like protein, large subunit	NA
UHGV-0049623_27	eggNOG-mapper	543734.LCABL_09820	overlaps another CDS with the same product name	NA
UHGV-0049623_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0049623_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0049623_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0049623_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0049623_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0049623_28	UniRef90	UniRef90_K6S8Y6	Phage-associated portal protein	NA
UHGV-0049623_28	eggNOG-mapper	543734.LCABL_11090	Phage portal protein	NA
UHGV-0049623_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0049623_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0049623_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0049623_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0049623_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0049623_29	UniRef90	UniRef90_A0A6H3FSE6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0049623_29	eggNOG-mapper	543734.LCABL_11100	Belongs to the peptidase S14 family	NA
UHGV-0049623_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0049623_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0049623_29	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0049623_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0049623_30	UniRef90	UniRef90_S4ZKQ8	Phage major capsid protein, HK97 family	NA
UHGV-0049623_30	eggNOG-mapper	543734.LCABL_11110	Phage capsid family	NA
UHGV-0049623_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0049623_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0049623_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0049623_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049623_32	PHROG	phrog_4609	NA	unknown function
UHGV-0049623_32	UniRef90	UniRef90_K6RR14	NA	NA
UHGV-0049623_32	eggNOG-mapper	543734.LCABL_09870	NA	NA
UHGV-0049623_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0049623_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0049623_33	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-0049623_33	UniRef90	UniRef90_K0N392	Head-tail adaptor protein	NA
UHGV-0049623_33	eggNOG-mapper	543734.LCABL_09880	Phage head-tail joining protein	NA
UHGV-0049623_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0049623_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0049623_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0049623_34	UniRef90	UniRef90_K0N3E7	NA	NA
UHGV-0049623_34	eggNOG-mapper	543734.LCABL_09890	NA	NA
UHGV-0049623_34	Structural annotation	PF20765	NA	NA
UHGV-0049623_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0049623_35	UniRef90	UniRef90_UPI001C8BC514	HK97 gp10 family phage protein	NA
UHGV-0049623_35	eggNOG-mapper	543734.LCABL_09900	NA	NA
UHGV-0049623_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0049623_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0049623_35	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0049623_36	PHROG	phrog_11502	tail protein	tail
UHGV-0049623_36	UniRef90	UniRef90_A0A6H3FTM3	Major tail protein, phi13 family	NA
UHGV-0049623_36	eggNOG-mapper	543734.LCABL_09910	NA	NA
UHGV-0049623_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0049623_37	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-0049623_37	UniRef90	UniRef90_K0MTV4	NA	NA
UHGV-0049623_37	eggNOG-mapper	543734.LCABL_11180	NA	NA
UHGV-0049623_37	Structural annotation	PF11836	NA	NA
UHGV-0049623_38	KOfam	K10396	KIF5; kinesin family member 5	NA
UHGV-0049623_38	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0049623_38	UniRef90	UniRef90_K0N3P8	PhageMin_Tail domain-containing protein	NA
UHGV-0049623_38	eggNOG-mapper	543734.LCABL_11200	Phage tail tape measure protein	NA
UHGV-0049623_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0049623_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0049623_38	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0049623_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0049623_39	UniRef90	UniRef90_K0N3Q3	Tail protein	NA
UHGV-0049623_39	eggNOG-mapper	543734.LCABL_11210	phage tail	NA
UHGV-0049623_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0049623_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0049623_40	PHROG	phrog_1330	tail protein	tail
UHGV-0049623_40	UniRef90	UniRef90_A0A826HW13	Peptidase S74 domain-containing protein	NA
UHGV-0049623_40	eggNOG-mapper	543734.LCABL_09960	gp58-like protein	NA
UHGV-0049623_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0049623_40	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0049623_40	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0049623_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0049623_40	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0049623_40	Structural annotation	PF14594, PF18957, MF_04116, TIGR01665, COG4926	NA	NA
UHGV-0049623_41	PHROG	phrog_1401	NA	unknown function
UHGV-0049623_41	UniRef90	UniRef90_UPI000F775C84	NA	NA
UHGV-0049623_41	eggNOG-mapper	543734.LCABL_09970	NA	NA
UHGV-0049623_41	Pfam	PF07761	NA	DUF1617
UHGV-0049623_41	Structural annotation	PF07761	NA	NA
UHGV-0049623_42	PHROG	phrog_2566	NA	unknown function
UHGV-0049623_42	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0049623_42	eggNOG-mapper	543734.LCABL_09980	NA	NA
UHGV-0049623_43	PHROG	phrog_1009	NA	unknown function
UHGV-0049623_43	UniRef90	UniRef90_S2NA97	NA	NA
UHGV-0049623_43	eggNOG-mapper	568703.LGG_01141	NA	NA
UHGV-0049623_44	PHROG	phrog_10091	holin	lysis
UHGV-0049623_44	UniRef90	UniRef90_K6RZD5	Holin	NA
UHGV-0049623_44	eggNOG-mapper	543734.LCABL_13460	Bacteriophage holin	NA
UHGV-0049623_44	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0049623_44	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0049623_44	COG	COG5546	NA	NA
UHGV-0049623_44	Structural annotation	PF04531, TIGR01598	NA	NA
UHGV-0049623_45	KOfam	K07273	acm; lysozyme	NA
UHGV-0049623_45	PHROG	phrog_291	endolysin	lysis
UHGV-0049623_45	UniRef90	UniRef90_A0A0E2BT86	Lysozyme	NA
UHGV-0049623_45	eggNOG-mapper	543734.LCABL_13470	Glycosyl hydrolases family 25	NA
UHGV-0049623_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0049623_45	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0049623_45	Pfam	PF01476	LysM domain	LysM
UHGV-0049623_45	COG	COG1388	LysM repeat	NA
UHGV-0049623_45	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA