UHGV-0049661

Genome information

Genome length 33,288 bps

CDS count 53

Completeness 89.07% (medium-quality)

geNomad score 0.9621

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049661
vOTU ID	vOTU-032417
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3829
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9621
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.47
Jumbo phage	No

Genome content
Genome length	33,288 bps
GC content	29.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.11%
Average CDS length	574.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049661_1	PHROG	phrog_16267	NA	unknown function
UHGV-0049661_1	UniRef90	UniRef90_UPI0006DC2AEE	tail fiber domain-containing protein	NA
UHGV-0049661_1	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0049661_1	COG	COG4926	Phage-related protein	NA
UHGV-0049661_1	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0049661_2	PHROG	phrog_1401	NA	unknown function
UHGV-0049661_2	UniRef90	UniRef90_UPI0018A98488	NA	NA
UHGV-0049661_2	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0049661_2	Structural annotation	PF07761	NA	NA
UHGV-0049661_3	PHROG	phrog_2566	NA	unknown function
UHGV-0049661_3	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0049661_4	PHROG	phrog_1194	NA	unknown function
UHGV-0049661_4	eggNOG-mapper	1499683.CCFF01000014_gene3899	NA	NA
UHGV-0049661_4	Pfam	PF20458	NA	DUF6711
UHGV-0049661_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0049661_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0049661_5	UniRef90	UniRef90_A0A1C6GVH2	Phage-related protein	NA
UHGV-0049661_5	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0049661_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0049661_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0049661_6	PHROG	phrog_8355	NA	unknown function
UHGV-0049661_6	UniRef90	UniRef90_A0A1C6K7X9	Bacteriophage Gp15 protein	NA
UHGV-0049661_6	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0049661_7	PHROG	phrog_8300	NA	unknown function
UHGV-0049661_7	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0049661_7	Structural annotation	PF06896	NA	NA
UHGV-0049661_8	PHROG	phrog_820	major tail protein	tail
UHGV-0049661_8	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-0049661_8	COG	COG5492	NA	NA
UHGV-0049661_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0049661_9	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0049661_9	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0049661_9	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0049661_9	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0049661_9	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0049661_10	eggNOG-mapper	33035.JPJF01000093_gene2248	NA	NA
UHGV-0049661_10	Structural annotation	PF11114	NA	NA
UHGV-0049661_11	PHROG	phrog_8710	NA	unknown function
UHGV-0049661_11	eggNOG-mapper	483218.BACPEC_01152	NA	NA
UHGV-0049661_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0049661_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0049661_12	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0049661_13	PHROG	phrog_1378	NA	unknown function
UHGV-0049661_13	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-0049661_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0049661_14	UniRef90	UniRef90_UPI000C06A988	capsid protein	NA
UHGV-0049661_14	eggNOG-mapper	1305708.M9Q2F4_9CAUD	NA	NA
UHGV-0049661_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0049661_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0049661_15	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0049661_15	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0049661_15	Structural annotation	PF10788	NA	NA
UHGV-0049661_16	PHROG	phrog_774	NA	unknown function
UHGV-0049661_16	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0049661_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0049661_18	UniRef90	UniRef90_A0A1C6GWM1	Phage minor capsid protein 2	NA
UHGV-0049661_18	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0049661_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0049661_18	COG	COG2369	NA	NA
UHGV-0049661_18	Structural annotation	PF06152	NA	NA
UHGV-0049661_19	PHROG	phrog_25639	NA	unknown function
UHGV-0049661_19	eggNOG-mapper	1282664.H354_06631	NA	NA
UHGV-0049661_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0049661_20	UniRef90	UniRef90_A0A1C6GX09	Phage portal protein, putative, A118 family	NA
UHGV-0049661_20	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0049661_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0049661_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049661_21	PHROG	phrog_10250	NA	unknown function
UHGV-0049661_21	UniRef90	UniRef90_A0A1C6GX29	Phage terminase, large subunit, PBSX family	NA
UHGV-0049661_21	eggNOG-mapper	1305708.M9Q2I1_9CAUD	DNA packaging	NA
UHGV-0049661_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0049661_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0049661_22	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0049661_22	UniRef90	UniRef90_B1BWD0	NA	NA
UHGV-0049661_22	eggNOG-mapper	1305708.M9Q2K7_9CAUD	NA	NA
UHGV-0049661_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0049661_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0049661_22	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0049661_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0049661_23	PHROG	phrog_216	integrase	integration and excision
UHGV-0049661_23	UniRef90	UniRef90_A0A1C6GWQ2	Site-specific tyrosine recombinase XerC	NA
UHGV-0049661_23	eggNOG-mapper	457396.CSBG_01042	Phage integrase family	NA
UHGV-0049661_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049661_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049661_23	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0049661_26	PHROG	phrog_9628	NA	unknown function
UHGV-0049661_26	UniRef90	UniRef90_A0A399IIK1	DNA-binding response regulator	NA
UHGV-0049661_26	eggNOG-mapper	536233.CLO_0876	NA	NA
UHGV-0049661_26	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0049661_28	KOfam	K06899	ndpA; nucleoid-associated protein	NA
UHGV-0049661_28	PHROG	phrog_1974	NA	unknown function
UHGV-0049661_28	UniRef90	UniRef90_A0A1C6GXA5	Nucleoid-associated protein NdpA	NA
UHGV-0049661_28	eggNOG-mapper	1414720.CBYM010000002_gene581	37-kD nucleoid-associated bacterial protein	NA
UHGV-0049661_28	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0049661_28	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0049661_28	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0049661_29	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049661_29	UniRef90	UniRef90_UPI00058CBF35	NA	NA
UHGV-0049661_29	eggNOG-mapper	1582152.A0A0A8WI22_9CAUD	NA	NA
UHGV-0049661_29	Pfam	PF12961	NA	DUF3850
UHGV-0049661_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0049661_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0049661_30	UniRef90	UniRef90_A0A1C6GXI4	Cytosine-specific methyltransferase	NA
UHGV-0049661_30	eggNOG-mapper	1211817.CCAT010000049_gene2479	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0049661_30	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0049661_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0049661_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0049661_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0049661_30	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0049661_38	Structural annotation	PF11148, MF_01553, COG5503	NA	NA
UHGV-0049661_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0049661_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0049661_40	UniRef90	UniRef90_A0A1C6GY63	DNA replication protein dnaC	NA
UHGV-0049661_40	eggNOG-mapper	1414720.CBYM010000001_gene676	PFAM IstB-like ATP binding protein	NA
UHGV-0049661_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0049661_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0049661_40	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0049661_41	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0049661_41	UniRef90	UniRef90_A0A1C6GYM3	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0049661_41	eggNOG-mapper	1220551.SCHR_00760	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0049661_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0049661_41	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0049661_41	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0049661_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0049661_41	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0049661_44	UniRef90	UniRef90_A0A1C6JI65	Spo0E like sporulation regulatory protein	NA
UHGV-0049661_44	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0049661_44	Structural annotation	PF09388	NA	NA
UHGV-0049661_45	PHROG	phrog_12396	NA	unknown function
UHGV-0049661_45	eggNOG-mapper	1305836.AXVE01000008_gene1194	NA	NA
UHGV-0049661_46	UniRef90	UniRef90_UPI000C0827A1	TFIIB-type zinc ribbon-containing protein	NA
UHGV-0049661_47	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0049661_47	UniRef90	UniRef90_A0A1C6GYV7	ORF6C domain	NA
UHGV-0049661_47	eggNOG-mapper	999411.HMPREF1092_00883	ORF6N domain	NA
UHGV-0049661_47	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0049661_47	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0049661_47	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0049661_47	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0049661_50	UniRef90	UniRef90_A0A1C6GYX6	Predicted transcriptional regulator	NA
UHGV-0049661_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049661_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0049661_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0049661_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049661_51	UniRef90	UniRef90_A0A1C6GYX5	Helix-turn-helix	NA
UHGV-0049661_51	eggNOG-mapper	573061.Clocel_2358	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049661_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049661_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0049661_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0049661_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0049661_52	UniRef90	UniRef90_A0A1C6GYL6	Recombinase	NA
UHGV-0049661_52	eggNOG-mapper	1321778.HMPREF1982_03926	Resolvase, N terminal domain	NA
UHGV-0049661_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0049661_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0049661_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0049661_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0049661_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0049661_53	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0049661_53	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0049661_53	UniRef90	UniRef90_A0A174BZP7	RNA polymerase sigma factor	NA
UHGV-0049661_53	eggNOG-mapper	545697.HMPREF0216_01850	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0049661_53	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0049661_53	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0049661_53	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0049661_53	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA