UHGV-0049667

Genome information

Genome length 59,202 bps

CDS count 87

Completeness 99.90% (high-quality)

geNomad score 0.9530

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049667
vOTU ID	vOTU-013195
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_19732
BioSample	SAMEA1968035
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9530
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.27
Jumbo phage	No

Genome content
Genome length	59,202 bps
GC content	36.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	89.46%
Average CDS length	612.31 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049667_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049667_4	UniRef90	UniRef90_A0A412WEX8	XRE family transcriptional regulator	NA
UHGV-0049667_4	eggNOG-mapper	997884.HMPREF1068_03266	NA	NA
UHGV-0049667_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049667_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049667_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0049667_5	UniRef90	UniRef90_UPI000DDBF43E	ribbon-helix-helix domain-containing protein	NA
UHGV-0049667_7	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0049667_7	UniRef90	UniRef90_UPI000B368565	DNA-packaging protein	NA
UHGV-0049667_7	eggNOG-mapper	357276.EL88_08420	DNA-packaging protein gp3	NA
UHGV-0049667_7	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0049667_7	Structural annotation	PF16677	NA	NA
UHGV-0049667_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049667_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0049667_8	UniRef90	UniRef90_UPI000B385012	phage terminase large subunit	NA
UHGV-0049667_8	eggNOG-mapper	1123276.KB893279_gene2250	Phage terminase, large subunit, PBSX family	NA
UHGV-0049667_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0049667_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0049667_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0049667_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049667_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0049667_9	UniRef90	UniRef90_UPI00111ECBEF	phage portal protein	NA
UHGV-0049667_9	eggNOG-mapper	1122971.BAME01000163_gene6626	Phage portal protein	NA
UHGV-0049667_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0049667_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0049667_10	KOfam	K06904	NA	NA
UHGV-0049667_10	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0049667_10	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-0049667_10	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0049667_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0049667_10	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0049667_10	COG	COG3740	Phage head maturation protease	NA
UHGV-0049667_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0049667_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0049667_11	UniRef90	UniRef90_UPI000B391E6C	phage major capsid protein	NA
UHGV-0049667_11	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0049667_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0049667_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0049667_11	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0049667_13	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0049667_13	Structural annotation	PF20459	NA	NA
UHGV-0049667_14	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-0049667_15	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0049667_17	PHROG	phrog_6195	tail protein	tail
UHGV-0049667_17	eggNOG-mapper	1347393.HG726021_gene380	NA	NA
UHGV-0049667_19	PHROG	phrog_14295	NA	unknown function
UHGV-0049667_19	eggNOG-mapper	679935.Alfi_0461	NA	NA
UHGV-0049667_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0049667_20	PHROG	phrog_22157	NA	unknown function
UHGV-0049667_20	eggNOG-mapper	742725.HMPREF9450_00889	NA	NA
UHGV-0049667_21	PHROG	phrog_38044	NA	unknown function
UHGV-0049667_21	UniRef90	UniRef90_UPI000D873A09	polymer-forming cytoskeletal protein	NA
UHGV-0049667_21	eggNOG-mapper	693979.Bache_2416	nuclear chromosome segregation	NA
UHGV-0049667_21	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0049667_21	Structural annotation	PF00629, PF16824, NF033675	NA	NA
UHGV-0049667_25	PHROG	phrog_3108	NA	unknown function
UHGV-0049667_25	eggNOG-mapper	342610.Patl_3555	lytic transglycosylase activity	NA
UHGV-0049667_25	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0049667_26	UniRef90	UniRef90_UPI0011226A1F	phage holin family protein	NA
UHGV-0049667_26	eggNOG-mapper	1347393.HG726026_gene2534	NA	NA
UHGV-0049667_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0049667_26	Structural annotation	PF05105, COG4824	NA	NA
UHGV-0049667_27	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0049667_30	Structural annotation	PF19666	NA	NA
UHGV-0049667_32	UniRef90	UniRef90_A0A7G8V2N2	PEGA domain-containing protein	NA
UHGV-0049667_32	eggNOG-mapper	470145.BACCOP_03408	NA	NA
UHGV-0049667_33	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0049667_37	PHROG	phrog_38431	NA	unknown function
UHGV-0049667_37	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0049667_37	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0049667_38	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0049667_38	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0049667_39	PHROG	phrog_5783	NA	unknown function
UHGV-0049667_39	UniRef90	UniRef90_UPI000DDA9308	NYN domain-containing protein	NA
UHGV-0049667_39	eggNOG-mapper	702438.HMPREF9431_02012	NYN domain	NA
UHGV-0049667_39	Pfam	PF01936	NYN domain	NYN
UHGV-0049667_39	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0049667_39	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0049667_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0049667_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0049667_46	UniRef90	UniRef90_UPI0014759289	phage antirepressor	NA
UHGV-0049667_46	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0049667_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0049667_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0049667_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0049667_46	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0049667_50	eggNOG-mapper	357276.EL88_11460	NA	NA
UHGV-0049667_51	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0049667_51	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0049667_51	UniRef90	UniRef90_A0A840CYF7	DNA replication protein DnaC	NA
UHGV-0049667_51	eggNOG-mapper	1168034.FH5T_18075	DNA-dependent DNA replication	NA
UHGV-0049667_51	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0049667_52	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0049667_52	UniRef90	UniRef90_A0A410TC49	DNA binding protein	NA
UHGV-0049667_52	eggNOG-mapper	1123248.KB893315_gene2930	NA	NA
UHGV-0049667_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0049667_52	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-0049667_54	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0049667_54	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0049667_54	UniRef90	UniRef90_UPI001F2CA0A4	DNA cytosine methyltransferase	NA
UHGV-0049667_54	eggNOG-mapper	762982.HMPREF9442_01223	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0049667_54	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0049667_54	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0049667_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0049667_56	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049667_56	UniRef90	UniRef90_UPI000D937A31	MazG-like family protein	NA
UHGV-0049667_56	eggNOG-mapper	458233.MCCL_0956	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0049667_56	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0049667_56	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0049667_56	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0049667_58	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0049667_58	UniRef90	UniRef90_UPI000E4B34D6	Rha family transcriptional regulator	NA
UHGV-0049667_58	eggNOG-mapper	1268240.ATFI01000007_gene446	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0049667_58	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0049667_58	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0049667_58	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0049667_61	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0049667_61	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0049667_61	UniRef90	UniRef90_UPI000D8FCB0A	reverse transcriptase domain-containing protein	NA
UHGV-0049667_61	eggNOG-mapper	457424.BFAG_02440	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0049667_61	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0049667_61	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0049667_61	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0049667_61	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0049667_62	PHROG	phrog_19665	NA	unknown function
UHGV-0049667_62	eggNOG-mapper	357276.EL88_12845	NA	NA
UHGV-0049667_63	PHROG	phrog_11581	NA	unknown function
UHGV-0049667_63	eggNOG-mapper	1506583.JQJY01000003_gene3423	NA	NA
UHGV-0049667_64	PHROG	phrog_11581	NA	unknown function
UHGV-0049667_64	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-0049667_65	PHROG	phrog_19572	NA	unknown function
UHGV-0049667_65	UniRef90	UniRef90_A0A412WQ50	NA	NA
UHGV-0049667_65	eggNOG-mapper	709991.Odosp_1960	Phage tail protein	NA
UHGV-0049667_65	Pfam	PF14902	NA	DUF4494
UHGV-0049667_65	Structural annotation	PF14902	NA	NA
UHGV-0049667_68	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0049667_68	UniRef90	UniRef90_UPI000D8884BC	NA	NA
UHGV-0049667_68	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0049667_68	Pfam	PF07105	NA	DUF1367
UHGV-0049667_68	Structural annotation	PF07105	NA	NA
UHGV-0049667_69	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049667_69	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049667_69	UniRef90	UniRef90_UPI000D8D1D9C	single-stranded DNA-binding protein	NA
UHGV-0049667_69	eggNOG-mapper	926569.ANT_21880	single-stranded DNA binding	NA
UHGV-0049667_69	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049667_69	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049667_69	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0049667_70	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0049667_70	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0049667_70	UniRef90	UniRef90_A0A412WQ26	ATP-dependent helicase	NA
UHGV-0049667_70	eggNOG-mapper	1123008.KB905702_gene2317	SNF2 family N-terminal domain	NA
UHGV-0049667_70	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0049667_70	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0049667_70	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0049667_70	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0049667_71	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049667_71	UniRef90	UniRef90_A0A412WPV2	Recombinase	NA
UHGV-0049667_71	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-0049667_71	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0049667_71	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0049667_71	Structural annotation	PF05766	NA	NA
UHGV-0049667_72	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0049667_72	eggNOG-mapper	1235803.C825_05318	NA	NA
UHGV-0049667_72	Structural annotation	PF11056	NA	NA
UHGV-0049667_73	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0049667_73	UniRef90	UniRef90_A0A412WPX8	NA	NA
UHGV-0049667_73	eggNOG-mapper	1121097.JCM15093_2720	NA	NA
UHGV-0049667_73	Pfam	PF12684	NA	DUF3799
UHGV-0049667_73	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0049667_74	eggNOG-mapper	1358423.N180_03045	NA	NA
UHGV-0049667_75	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0049667_75	UniRef90	UniRef90_A0A412WQ41	Serine/threonine protein kinase	NA
UHGV-0049667_75	eggNOG-mapper	1123008.KB905702_gene2306	RecT family	NA
UHGV-0049667_75	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0049667_75	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0049667_76	Structural annotation	PF18822	NA	NA
UHGV-0049667_81	UniRef90	UniRef90_A0A3E4KJL4	Helix-turn-helix transcriptional regulator	NA
UHGV-0049667_81	eggNOG-mapper	1203550.HMPREF1475_00601	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0049667_81	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0049667_83	eggNOG-mapper	1336803.PHEL49_2134	NA	NA
UHGV-0049667_85	UniRef90	UniRef90_UPI000B3902C0	helix-turn-helix domain-containing protein	NA
UHGV-0049667_85	eggNOG-mapper	1123058.KB894217_gene645	Transcriptional regulator	NA
UHGV-0049667_85	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049667_85	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0049667_86	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0049667_86	PHROG	phrog_8036	NA	unknown function
UHGV-0049667_86	UniRef90	UniRef90_UPI000B3782D6	DNA damage-inducible protein D	NA
UHGV-0049667_86	eggNOG-mapper	445970.ALIPUT_02702	DNA-damage-inducible protein D	NA
UHGV-0049667_86	AcrCatalog	cluster_17589	NA	NA
UHGV-0049667_86	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0049667_86	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0049667_86	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0049667_86	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0049667_86	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0049667_87	eggNOG-mapper	1123008.KB905696_gene2899	NA	NA
UHGV-0049667_87	Structural annotation	PF20200, NF038041, COG3126	NA	NA