UHGV-0049681

Genome information

Genome length 32,399 bps

CDS count 45

Completeness 85.91% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049681
vOTU ID	vOTU-037988
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_14216
BioSample	SAMEA2042630
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.78
Jumbo phage	No

Genome content
Genome length	32,399 bps
GC content	42.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	89.28%
Average CDS length	646.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049681_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0049681_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0049681_1	UniRef90	UniRef90_A0A3E5GSR5	Recombinase family protein	NA
UHGV-0049681_1	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-0049681_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0049681_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0049681_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0049681_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0049681_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0049681_2	PHROG	phrog_16228	NA	unknown function
UHGV-0049681_2	UniRef90	UniRef90_B0G1D4	Uma2 domain-containing protein	NA
UHGV-0049681_2	eggNOG-mapper	742765.HMPREF9457_02091	Putative restriction endonuclease	NA
UHGV-0049681_2	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0049681_2	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0049681_2	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0049681_4	PHROG	phrog_87	metallo-protease	other
UHGV-0049681_4	UniRef90	UniRef90_A0A3E5EK41	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0049681_4	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0049681_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0049681_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0049681_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0049681_5	UniRef90	UniRef90_UPI00156F9E81	XRE family transcriptional regulator	NA
UHGV-0049681_5	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-0049681_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0049681_5	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0049681_6	UniRef90	UniRef90_UPI0011115B61	helix-turn-helix domain-containing protein	NA
UHGV-0049681_6	eggNOG-mapper	1280692.AUJL01000011_gene3217	NA	NA
UHGV-0049681_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049681_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0049681_7	eggNOG-mapper	411468.CLOSCI_01459	NA	NA
UHGV-0049681_8	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0049681_9	PHROG	phrog_32342	NA	unknown function
UHGV-0049681_10	PHROG	phrog_7566	NA	unknown function
UHGV-0049681_10	UniRef90	UniRef90_A0A414QES0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0049681_10	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0049681_11	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0049681_11	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0049681_12	PHROG	phrog_1029	NA	unknown function
UHGV-0049681_12	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0049681_12	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0049681_13	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0049681_13	UniRef90	UniRef90_R6S5E8	NA	NA
UHGV-0049681_13	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0049681_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0049681_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0049681_13	Structural annotation	PF14297	NA	NA
UHGV-0049681_14	PHROG	phrog_15077	NA	unknown function
UHGV-0049681_14	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0049681_14	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0049681_14	Structural annotation	NF038070	NA	NA
UHGV-0049681_15	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0049681_16	PHROG	phrog_26445	NA	unknown function
UHGV-0049681_16	UniRef90	UniRef90_A0A3E5GSS3	DNA-binding response regulator	NA
UHGV-0049681_16	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0049681_16	Structural annotation	PF00196	NA	NA
UHGV-0049681_19	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0049681_19	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0049681_19	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0049681_19	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0049681_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049681_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0049681_20	UniRef90	UniRef90_B0G3C9	Phage terminase, large subunit, PBSX family	NA
UHGV-0049681_20	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0049681_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0049681_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0049681_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0049681_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0049681_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049681_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0049681_21	UniRef90	UniRef90_B0G3C8	Phage minor capsid protein	NA
UHGV-0049681_21	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0049681_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049681_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0049681_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0049681_22	UniRef90	UniRef90_UPI0018AA9658	phage minor capsid protein	NA
UHGV-0049681_22	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0049681_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0049681_22	COG	COG2369	NA	NA
UHGV-0049681_22	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0049681_23	eggNOG-mapper	742765.HMPREF9457_02124	NA	NA
UHGV-0049681_24	KOfam	K07584	NA	NA
UHGV-0049681_24	PHROG	phrog_4478	peptidase	other
UHGV-0049681_24	UniRef90	UniRef90_A0A3E5EK56	Ribosomal-processing cysteine protease Prp	NA
UHGV-0049681_24	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0049681_24	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0049681_24	COG	COG2868	NA	NA
UHGV-0049681_24	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0049681_25	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0049681_25	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0049681_25	AcrCatalog	cluster_74817	NA	NA
UHGV-0049681_25	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0049681_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0049681_26	UniRef90	UniRef90_A6BER6	Putative phage capsid family	NA
UHGV-0049681_26	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0049681_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0049681_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0049681_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0049681_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049681_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0049681_27	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0049681_28	PHROG	phrog_3366	NA	unknown function
UHGV-0049681_28	eggNOG-mapper	411461.DORFOR_00742	NA	NA
UHGV-0049681_28	Pfam	PF20536	NA	DUF6751
UHGV-0049681_28	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0049681_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0049681_29	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0049681_29	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0049681_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0049681_29	Structural annotation	PF11114	NA	NA
UHGV-0049681_30	PHROG	phrog_3266	tail completion	connector
UHGV-0049681_30	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0049681_30	Structural annotation	PF12691	NA	NA
UHGV-0049681_31	PHROG	phrog_3099	NA	unknown function
UHGV-0049681_31	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-0049681_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0049681_32	PHROG	phrog_4450	NA	unknown function
UHGV-0049681_32	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0049681_32	Pfam	PF20378	NA	DUF6673
UHGV-0049681_32	Structural annotation	PF20378	NA	NA
UHGV-0049681_33	PHROG	phrog_706	NA	unknown function
UHGV-0049681_33	UniRef90	UniRef90_B0G3B6	Bacteriophage Gp15 protein	NA
UHGV-0049681_33	eggNOG-mapper	411461.DORFOR_00737	COG NOG24969 non supervised orthologous group	NA
UHGV-0049681_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0049681_33	Structural annotation	PF06854	NA	NA
UHGV-0049681_34	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0049681_34	UniRef90	UniRef90_A0A173TTL9	Phage-related protein	NA
UHGV-0049681_34	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0049681_34	COG	COG1511	NA	NA
UHGV-0049681_34	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0049681_35	eggNOG-mapper	411461.DORFOR_00735	nuclear chromosome segregation	NA
UHGV-0049681_35	COG	COG1511	NA	NA
UHGV-0049681_36	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0049681_36	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0049681_36	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0049681_37	PHROG	phrog_538	minor tail protein	tail
UHGV-0049681_37	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0049681_37	eggNOG-mapper	742765.HMPREF9457_03374	NA	NA
UHGV-0049681_37	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0049681_37	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0049681_38	PHROG	phrog_25635	NA	unknown function
UHGV-0049681_38	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0049681_38	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0049681_38	Structural annotation	PF20747, NF012201	NA	NA
UHGV-0049681_39	PHROG	phrog_12931	NA	unknown function
UHGV-0049681_39	eggNOG-mapper	1280698.AUJS01000007_gene1052	NA	NA
UHGV-0049681_40	eggNOG-mapper	411461.DORFOR_01181	NA	NA
UHGV-0049681_42	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0049681_43	PHROG	phrog_37799	NA	unknown function
UHGV-0049681_43	UniRef90	UniRef90_A0A3E5GSW8	Protein utxA	NA
UHGV-0049681_43	eggNOG-mapper	610130.Closa_1414	toxin secretion phage lysis holin	NA
UHGV-0049681_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0049681_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0049681_43	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0049681_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0049681_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0049681_45	PHROG	phrog_435	endolysin	lysis
UHGV-0049681_45	UniRef90	UniRef90_A0A1C5SUS3	N-acetylmuramoyl-L-alanine amidase CwlD	NA
UHGV-0049681_45	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049681_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0049681_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049681_45	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA