UHGV-0049756

Genome information

Genome length 37,442 bps

CDS count 63

Completeness 96.95% (high-quality)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049756
vOTU ID	vOTU-071416
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_854
BioSample	SAMD00036377
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.44
Jumbo phage	No

Genome content
Genome length	37,442 bps
GC content	34.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.76%
Average CDS length	554.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049756_3	PHROG	phrog_5881	NA	unknown function
UHGV-0049756_4	UniRef90	UniRef90_A0A7V7GK30	Chromosome partitioning protein	NA
UHGV-0049756_6	UniRef90	UniRef90_A0A3F3LGG6	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-0049756_6	eggNOG-mapper	1104325.M7W_1074	Ami_2	NA
UHGV-0049756_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0049756_8	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0049756_8	PHROG	phrog_291	endolysin	lysis
UHGV-0049756_8	UniRef90	UniRef90_S4EI36	Glycosyl hydrolase family 25	NA
UHGV-0049756_8	eggNOG-mapper	673837.D2IZV5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0049756_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0049756_8	Pfam	PF01476	LysM domain	LysM
UHGV-0049756_8	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0049756_9	PHROG	phrog_881	holin	lysis
UHGV-0049756_9	UniRef90	UniRef90_C9AN11	Holin	NA
UHGV-0049756_9	eggNOG-mapper	1140002.I570_03993	Putative phage holin Dp-1	NA
UHGV-0049756_9	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0049756_9	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0049756_10	PHROG	phrog_689	holin	lysis
UHGV-0049756_10	UniRef90	UniRef90_A0A1L8WAB0	Holin	NA
UHGV-0049756_10	eggNOG-mapper	1158602.I590_03012	Haemolysin XhlA	NA
UHGV-0049756_10	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0049756_11	PHROG	phrog_9884	NA	unknown function
UHGV-0049756_11	UniRef90	UniRef90_UPI000F4FE391	BppU family phage baseplate upper protein	NA
UHGV-0049756_11	eggNOG-mapper	768486.EHR_09635	NA	NA
UHGV-0049756_11	Structural annotation	PF10651, PF03422, PF08931, NF033675, NF040788	NA	NA
UHGV-0049756_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0049756_12	UniRef90	UniRef90_A0A1L8WAB1	Phage minor structural protein	NA
UHGV-0049756_12	eggNOG-mapper	565664.EFXG_01765	Prophage endopeptidase tail	NA
UHGV-0049756_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0049756_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0049756_12	COG	COG4926	Phage-related protein	NA
UHGV-0049756_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0049756_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0049756_13	UniRef90	UniRef90_I6SDW0	Gp13 protein	NA
UHGV-0049756_13	eggNOG-mapper	565664.EFXG_01766	phage tail	NA
UHGV-0049756_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0049756_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0049756_14	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0049756_14	UniRef90	UniRef90_A0A828ZZU7	Phage tail tape measure protein	NA
UHGV-0049756_14	eggNOG-mapper	768486.EHR_09620	Phage-related minor tail protein	NA
UHGV-0049756_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0049756_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0049756_15	PHROG	phrog_15063	NA	unknown function
UHGV-0049756_16	PHROG	phrog_5802	NA	unknown function
UHGV-0049756_16	eggNOG-mapper	565664.EFXG_01769	NA	NA
UHGV-0049756_17	UniRef90	UniRef90_A0A828ZRA6	Phage major tail protein B	NA
UHGV-0049756_17	eggNOG-mapper	768486.EHR_09605	NA	NA
UHGV-0049756_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0049756_18	PHROG	phrog_5509	neck protein	connector
UHGV-0049756_18	UniRef90	UniRef90_I6SDV7	Gp9 protein	NA
UHGV-0049756_18	eggNOG-mapper	768486.EHR_09600	NA	NA
UHGV-0049756_18	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0049756_19	PHROG	phrog_5910	NA	unknown function
UHGV-0049756_19	UniRef90	UniRef90_I6SZA1	Gp8 protein	NA
UHGV-0049756_19	eggNOG-mapper	565664.EFXG_01772	NA	NA
UHGV-0049756_20	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0049756_20	UniRef90	UniRef90_A0A133CKL1	Head-tail adaptor protein	NA
UHGV-0049756_20	eggNOG-mapper	565664.EFXG_01773	NA	NA
UHGV-0049756_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0049756_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0049756_21	PHROG	phrog_749	NA	unknown function
UHGV-0049756_21	UniRef90	UniRef90_I6S2A8	Gp6 protein	NA
UHGV-0049756_21	eggNOG-mapper	768486.EHR_09585	NA	NA
UHGV-0049756_22	PHROG	phrog_4417	NA	unknown function
UHGV-0049756_22	UniRef90	UniRef90_A0A0R1JPC3	Conserved bacteriophage protein	NA
UHGV-0049756_22	eggNOG-mapper	565664.EFXG_01775	NA	NA
UHGV-0049756_22	Structural annotation	PF03414, NF041524, COG1442	NA	NA
UHGV-0049756_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0049756_23	UniRef90	UniRef90_I6SDV1	Major capsid protein	NA
UHGV-0049756_23	eggNOG-mapper	565664.EFXG_01776	Phage capsid family	NA
UHGV-0049756_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0049756_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0049756_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0049756_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049756_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0049756_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0049756_24	UniRef90	UniRef90_A0A132P4D5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0049756_24	eggNOG-mapper	768486.EHR_09570	Clp protease	NA
UHGV-0049756_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0049756_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0049756_24	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0049756_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0049756_25	UniRef90	UniRef90_I6T7N2	Phage portal protein, HK97 family	NA
UHGV-0049756_25	eggNOG-mapper	768486.EHR_09565	Phage portal protein	NA
UHGV-0049756_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0049756_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0049756_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0049756_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0049756_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0049756_26	UniRef90	UniRef90_A0A132ZDE4	Phage Terminase	NA
UHGV-0049756_26	eggNOG-mapper	565664.EFXG_01779	Phage Terminase	NA
UHGV-0049756_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0049756_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0049756_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0049756_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0049756_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0049756_27	UniRef90	UniRef90_A0A132P4G0	Phage terminase, small subunit	NA
UHGV-0049756_27	eggNOG-mapper	565664.EFXG_01780	NA	NA
UHGV-0049756_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0049756_28	PHROG	phrog_5942	NA	unknown function
UHGV-0049756_28	eggNOG-mapper	565664.EFXG_01781	NA	NA
UHGV-0049756_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0049756_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0049756_29	UniRef90	UniRef90_A0A133CKZ7	HNH endonuclease	NA
UHGV-0049756_29	eggNOG-mapper	565664.EFXG_01782	HNH endonuclease	NA
UHGV-0049756_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0049756_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0049756_30	PHROG	phrog_9904	NA	unknown function
UHGV-0049756_30	UniRef90	UniRef90_A0A132P4F8	Thymidylate synthase	NA
UHGV-0049756_31	UniRef90	UniRef90_Q5H7Z7	SepS25A protein	NA
UHGV-0049756_31	eggNOG-mapper	1234679.BN424_1485	NA	NA
UHGV-0049756_32	PHROG	phrog_11507	NA	unknown function
UHGV-0049756_32	UniRef90	UniRef90_A0A1S5WAA0	Putative phage protein	NA
UHGV-0049756_32	eggNOG-mapper	1314.HKU360_00775	NA	NA
UHGV-0049756_33	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0049756_33	UniRef90	UniRef90_Q47836	Putative autolysin regulatory protein ArpU	NA
UHGV-0049756_33	eggNOG-mapper	768486.EHR_09525	NA	NA
UHGV-0049756_33	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0049756_33	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0049756_34	PHROG	phrog_14396	NA	unknown function
UHGV-0049756_34	Structural annotation	PF10750	NA	NA
UHGV-0049756_35	PHROG	phrog_3302	NA	unknown function
UHGV-0049756_35	UniRef90	UniRef90_Q47835	ArpT	NA
UHGV-0049756_35	eggNOG-mapper	1140001.I571_02100	NA	NA
UHGV-0049756_35	Structural annotation	PF09953, MF_00906, NF000331, COG4873	NA	NA
UHGV-0049756_36	PHROG	phrog_10711	NA	unknown function
UHGV-0049756_36	UniRef90	UniRef90_Q47834	ArpS	NA
UHGV-0049756_36	eggNOG-mapper	1104325.M7W_1343	NA	NA
UHGV-0049756_37	PHROG	phrog_36070	NA	unknown function
UHGV-0049756_37	UniRef90	UniRef90_C9B723	Predicted protein	NA
UHGV-0049756_38	PHROG	phrog_10419	NA	unknown function
UHGV-0049756_38	UniRef90	UniRef90_UPI001158986B	phosphocarrier protein HPr domain protein	NA
UHGV-0049756_38	eggNOG-mapper	1300150.EMQU_2287	NA	NA
UHGV-0049756_39	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049756_39	UniRef90	UniRef90_UPI0009B2C5AD	MazG-like family protein	NA
UHGV-0049756_39	eggNOG-mapper	1158604.I591_00394	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0049756_39	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0049756_39	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0049756_40	PHROG	phrog_5224	NA	unknown function
UHGV-0049756_40	eggNOG-mapper	565664.EFXG_03934	NA	NA
UHGV-0049756_40	Structural annotation	PF04936	NA	NA
UHGV-0049756_41	PHROG	phrog_7773	NA	unknown function
UHGV-0049756_41	UniRef90	UniRef90_A0A7V7KSZ0	Antitoxin	NA
UHGV-0049756_41	eggNOG-mapper	565664.EFXG_01149	NA	NA
UHGV-0049756_41	Structural annotation	PF19824, MF_01506, NF011893	NA	NA
UHGV-0049756_42	PHROG	phrog_5224	NA	unknown function
UHGV-0049756_42	eggNOG-mapper	565664.EFXG_01791	NA	NA
UHGV-0049756_42	Structural annotation	PF04936	NA	NA
UHGV-0049756_43	PHROG	phrog_21958	NA	unknown function
UHGV-0049756_43	eggNOG-mapper	565664.EFXG_01147	NA	NA
UHGV-0049756_43	Structural annotation	PF07870, NF011893, COG3461	NA	NA
UHGV-0049756_44	PHROG	phrog_26325	NA	unknown function
UHGV-0049756_44	eggNOG-mapper	565664.EFXG_01146	NA	NA
UHGV-0049756_45	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0049756_45	UniRef90	UniRef90_A0A8F5FXS4	Replisome organizer	NA
UHGV-0049756_45	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0049756_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0049756_45	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0049756_47	PHROG	phrog_398	NA	unknown function
UHGV-0049756_47	UniRef90	UniRef90_UPI00115945F6	putative HNHc nuclease	NA
UHGV-0049756_47	eggNOG-mapper	1158604.I591_00386	Putative HNHc nuclease	NA
UHGV-0049756_47	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0049756_47	Structural annotation	PF16784	NA	NA
UHGV-0049756_48	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049756_48	UniRef90	UniRef90_A0A132ZI75	NA	NA
UHGV-0049756_48	eggNOG-mapper	565664.EFXG_02873	NA	NA
UHGV-0049756_48	Pfam	PF06378	NA	DUF1071
UHGV-0049756_49	PHROG	phrog_13506	NA	unknown function
UHGV-0049756_49	eggNOG-mapper	1104325.M7W_2069	NA	NA
UHGV-0049756_50	PHROG	phrog_11542	NA	unknown function
UHGV-0049756_50	eggNOG-mapper	768486.EHR_09455	NA	NA
UHGV-0049756_51	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0049756_51	UniRef90	UniRef90_A0A1V8Y9Q9	Antirepressor	NA
UHGV-0049756_51	eggNOG-mapper	768486.EHR_09450	ORF6C domain	NA
UHGV-0049756_51	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0049756_51	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0049756_51	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0049756_51	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0049756_53	PHROG	phrog_13092	NA	unknown function
UHGV-0049756_53	UniRef90	UniRef90_C9B4H9	Predicted protein	NA
UHGV-0049756_53	eggNOG-mapper	1104325.M7W_2072	NA	NA
UHGV-0049756_54	PHROG	phrog_823	NA	unknown function
UHGV-0049756_54	UniRef90	UniRef90_A0A132ZII2	NA	NA
UHGV-0049756_54	eggNOG-mapper	565664.EFXG_01139	NA	NA
UHGV-0049756_54	Pfam	PF05595	NA	DUF771
UHGV-0049756_54	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0049756_54	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0049756_55	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049756_55	UniRef90	UniRef90_A0A0V7Y7Y5	Helix-turn-helix domain protein	NA
UHGV-0049756_55	eggNOG-mapper	1140001.I571_01701	Helix-turn-helix	NA
UHGV-0049756_56	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0049756_56	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0049756_56	UniRef90	UniRef90_A0A829F4Z7	Bro family toxin-antitoxin system, toxin component	NA
UHGV-0049756_56	eggNOG-mapper	1158604.I591_00377	BRO family, N-terminal domain	NA
UHGV-0049756_56	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0049756_56	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0049756_56	COG	COG3617	Prophage antirepressor	NA
UHGV-0049756_56	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0049756_57	PHROG	phrog_14546	NA	unknown function
UHGV-0049756_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0049756_59	UniRef90	UniRef90_A0A0M2B0U9	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0049756_59	eggNOG-mapper	1158604.I591_00376	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049756_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049756_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049756_59	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0049756_60	PHROG	phrog_87	metallo-protease	other
UHGV-0049756_60	UniRef90	UniRef90_A0A829A593	Peptidase_M78 domain-containing protein	NA
UHGV-0049756_60	eggNOG-mapper	565664.EFXG_01135	IrrE N-terminal-like domain	NA
UHGV-0049756_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0049756_61	PHROG	phrog_806	NA	unknown function
UHGV-0049756_61	UniRef90	UniRef90_A0A133CJ08	NA	NA
UHGV-0049756_61	eggNOG-mapper	1300150.EMQU_2343	NA	NA
UHGV-0049756_61	Pfam	PF11611	NA	DUF4352
UHGV-0049756_61	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0049756_62	KOfam	K14059	int; integrase	NA
UHGV-0049756_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0049756_62	UniRef90	UniRef90_A0A7H4KTC4	Site-specific tyrosine recombinase XerC-family protein	NA
UHGV-0049756_62	eggNOG-mapper	565664.EFXG_01131	Pfam:Integrase_AP2	NA
UHGV-0049756_62	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0049756_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049756_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049756_62	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0049756_63	eggNOG-mapper	1104325.M7W_2080	NA	NA