UHGV-0049825

Genome information

Genome length 20,109 bps

CDS count 38

Completeness 53.80% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049825
vOTU ID	vOTU-035045
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_34869
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.76
Jumbo phage	No

Genome content
Genome length	20,109 bps
GC content	28.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	94.51%
Average CDS length	506.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049825_1	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0049825_1	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0049825_1	UniRef90	UniRef90_A0A558KD50	DNA polymerase III subunit alpha (Fragment)	NA
UHGV-0049825_1	eggNOG-mapper	1340434.AXVA01000005_gene4533	DNA polymerase	NA
UHGV-0049825_1	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0049825_1	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0049825_5	PHROG	phrog_1194	NA	unknown function
UHGV-0049825_5	eggNOG-mapper	1122919.KB905559_gene1345	NA	NA
UHGV-0049825_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0049825_6	PHROG	phrog_1204	tail protein	tail
UHGV-0049825_6	eggNOG-mapper	1476888.X4YGV5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0049825_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0049825_7	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0049825_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0049825_8	UniRef90	UniRef90_UPI000F54A0BC	lipoprotein	NA
UHGV-0049825_8	eggNOG-mapper	272562.CA_C1318	NA	NA
UHGV-0049825_10	Structural annotation	PF12363	NA	NA
UHGV-0049825_11	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0049825_12	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0049825_12	Structural annotation	PF05657	NA	NA
UHGV-0049825_13	eggNOG-mapper	445972.ANACOL_01849	NA	NA
UHGV-0049825_13	Structural annotation	TIGR01725	NA	NA
UHGV-0049825_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0049825_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0049825_16	UniRef90	UniRef90_A0A3D1PN29	S-l_SbsC_C domain-containing protein	NA
UHGV-0049825_16	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0049825_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0049825_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0049825_16	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049825_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0049825_17	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0049825_17	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0049825_17	Pfam	PF14265	NA	DUF4355
UHGV-0049825_17	Structural annotation	PF14265	NA	NA
UHGV-0049825_19	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0049825_19	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0049825_19	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0049825_19	Structural annotation	TIGR01641	NA	NA
UHGV-0049825_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0049825_20	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0049825_20	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0049825_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0049825_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0049825_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049825_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0049825_21	UniRef90	UniRef90_A0A3E3EFM7	PBSX family phage terminase large subunit	NA
UHGV-0049825_21	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0049825_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0049825_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0049825_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0049825_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0049825_21	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0049825_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049825_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0049825_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0049825_22	UniRef90	UniRef90_R6HDV5	Prophage LambdaCh01 terminase small subunit	NA
UHGV-0049825_22	eggNOG-mapper	246194.CHY_1681	terminase, small subunit	NA
UHGV-0049825_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0049825_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0049825_24	eggNOG-mapper	1009370.ALO_12391	NA	NA
UHGV-0049825_24	Structural annotation	PF10263	NA	NA
UHGV-0049825_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049825_27	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0049825_34	PHROG	phrog_7880	NA	unknown function
UHGV-0049825_35	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049825_35	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-0049825_35	eggNOG-mapper	293826.Amet_2598	NA	NA
UHGV-0049825_35	Pfam	PF06356	NA	DUF1064
UHGV-0049825_35	Structural annotation	PF06356	NA	NA
UHGV-0049825_36	Structural annotation	PF15188	NA	NA