UHGV-0049946

Genome information

Genome length 34,516 bps

CDS count 46

Completeness 84.80% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049946
vOTU ID	vOTU-014937
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_42147
BioSample	SAMEA2152373
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.99
Jumbo phage	No

Genome content
Genome length	34,516 bps
GC content	59.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.88%
Average CDS length	676.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049946_1	PHROG	phrog_608	holin	lysis
UHGV-0049946_1	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0049946_1	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0049946_1	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0049946_3	PHROG	phrog_21357	endolysin	lysis
UHGV-0049946_3	UniRef90	UniRef90_A0A1C5RUQ6	Exo-glucosaminidase lytG	NA
UHGV-0049946_3	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0049946_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-0049946_3	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0049946_3	COG	COG1388	LysM repeat	NA
UHGV-0049946_3	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0049946_5	PHROG	phrog_9534	head protein	head and packaging
UHGV-0049946_5	UniRef90	UniRef90_UPI0015C5CE46	tail fiber protein	NA
UHGV-0049946_5	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0049946_5	Structural annotation	PF21567	NA	NA
UHGV-0049946_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0049946_6	UniRef90	UniRef90_A0A6B9SRK1	Endopeptidase tail protein	NA
UHGV-0049946_6	eggNOG-mapper	394503.Ccel_0826	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0049946_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0049946_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0049946_7	PHROG	phrog_36410	NA	unknown function
UHGV-0049946_7	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0049946_7	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0049946_7	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0049946_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0049946_8	UniRef90	UniRef90_A0A6N3F627	TMP_3 domain-containing protein	NA
UHGV-0049946_8	eggNOG-mapper	913865.DOT_2893	tape measure	NA
UHGV-0049946_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0049946_8	Structural annotation	PF20155, TIGR01760, NF011901	NA	NA
UHGV-0049946_9	PHROG	phrog_706	NA	unknown function
UHGV-0049946_9	UniRef90	UniRef90_U2UP44	Bacteriophage Gp15 protein	NA
UHGV-0049946_9	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0049946_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0049946_9	Structural annotation	PF06854	NA	NA
UHGV-0049946_11	PHROG	phrog_3099	NA	unknown function
UHGV-0049946_11	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0049946_11	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0049946_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0049946_12	PHROG	phrog_3266	tail completion	connector
UHGV-0049946_12	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-0049946_12	Structural annotation	PF12691	NA	NA
UHGV-0049946_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0049946_13	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0049946_13	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0049946_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0049946_13	Structural annotation	PF11114	NA	NA
UHGV-0049946_14	PHROG	phrog_3366	NA	unknown function
UHGV-0049946_14	Pfam	PF20536	NA	DUF6751
UHGV-0049946_14	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0049946_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0049946_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-0049946_16	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0049946_16	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0049946_16	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0049946_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0049946_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0049946_20	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-0049946_20	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0049946_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0049946_20	COG	COG2369	NA	NA
UHGV-0049946_20	Structural annotation	PF06152	NA	NA
UHGV-0049946_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0049946_21	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0049946_21	eggNOG-mapper	1160721.RBI_II00542	NA	NA
UHGV-0049946_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0049946_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0049946_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0049946_22	UniRef90	UniRef90_A0A413FZC6	PBSX family phage terminase large subunit	NA
UHGV-0049946_22	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0049946_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0049946_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0049946_22	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049946_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0049946_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0049946_23	UniRef90	UniRef90_A0A329UVE7	Terminase small subunit	NA
UHGV-0049946_23	eggNOG-mapper	509191.AEDB02000023_gene3615	Terminase small subunit	NA
UHGV-0049946_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0049946_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0049946_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0049946_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0049946_24	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0049946_24	eggNOG-mapper	1027292.HMPREF9372_1273	NA	NA
UHGV-0049946_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0049946_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0049946_24	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0049946_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0049946_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049946_26	UniRef90	UniRef90_R5GVZ7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0049946_26	eggNOG-mapper	1232449.BAHV02000008_gene624	Endodeoxyribonuclease RusA	NA
UHGV-0049946_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0049946_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0049946_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0049946_27	PHROG	phrog_3777	NA	unknown function
UHGV-0049946_27	UniRef90	UniRef90_UPI0019572B07	NA	NA
UHGV-0049946_27	eggNOG-mapper	1410668.JNKC01000011_gene1114	NA	NA
UHGV-0049946_27	Pfam	PF12957	NA	DUF3846
UHGV-0049946_27	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0049946_28	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0049946_28	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0049946_28	UniRef90	UniRef90_UPI0018A0FC0D	AAA family ATPase	NA
UHGV-0049946_28	eggNOG-mapper	1232428.CAVO010000021_gene813	Primase C terminal 2 (PriCT-2)	NA
UHGV-0049946_28	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0049946_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0049946_28	COG	COG3598	RecA-family ATPase	NA
UHGV-0049946_28	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0049946_29	PHROG	phrog_1029	NA	unknown function
UHGV-0049946_29	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0049946_29	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0049946_30	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0049946_30	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0049946_30	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0049946_31	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0049946_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0049946_31	UniRef90	UniRef90_A0A316PWK6	DEAD/DEAH box helicase	NA
UHGV-0049946_31	eggNOG-mapper	645991.Sgly_0323	type III restriction enzyme, res subunit	NA
UHGV-0049946_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0049946_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0049946_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0049946_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0049946_31	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0049946_32	PHROG	phrog_2698	NA	unknown function
UHGV-0049946_32	UniRef90	UniRef90_A0A415Z1P1	NA	NA
UHGV-0049946_32	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0049946_32	Structural annotation	PF05037	NA	NA
UHGV-0049946_33	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0049946_33	UniRef90	UniRef90_UPI0011068BCC	ATP-binding protein	NA
UHGV-0049946_33	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0049946_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0049946_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0049946_34	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0049946_34	PHROG	phrog_1499	NA	unknown function
UHGV-0049946_34	UniRef90	UniRef90_A0A1Y4RLQ9	Chromosome segregation protein SMC	NA
UHGV-0049946_34	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-0049946_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-0049946_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0049946_34	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0049946_38	UniRef90	UniRef90_A0A3E5GSH9	XRE family transcriptional regulator	NA
UHGV-0049946_38	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0049946_40	Structural annotation	PF06034, NF010671	NA	NA
UHGV-0049946_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0049946_42	UniRef90	UniRef90_A0A0C2SEF7	Helix-turn-helix transcriptional regulator	NA
UHGV-0049946_42	eggNOG-mapper	536233.CLO_0953	Helix-turn-helix XRE-family like proteins	NA
UHGV-0049946_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049946_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0049946_42	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0049946_43	UniRef90	UniRef90_UPI0012DF15AB	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0049946_43	eggNOG-mapper	887325.HMPREF0381_1367	NA	NA
UHGV-0049946_43	Structural annotation	PF05015, TIGR00053, COG4115	NA	NA
UHGV-0049946_44	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0049946_44	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0049946_44	UniRef90	UniRef90_UPI0003FD3A3C	HigA family addiction module antitoxin	NA
UHGV-0049946_44	eggNOG-mapper	1095750.HMPREF9970_2637	IrrE N-terminal-like domain	NA
UHGV-0049946_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0049946_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0049946_44	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-0049946_44	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0049946_44	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-0049946_45	KOfam	K14059	int; integrase	NA
UHGV-0049946_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0049946_45	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0049946_45	eggNOG-mapper	521460.Athe_1029	Belongs to the 'phage' integrase family	NA
UHGV-0049946_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0049946_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0049946_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0049946_46	PHROG	phrog_18012	NA	unknown function
UHGV-0049946_46	UniRef90	UniRef90_A0A3D5TGL5	Zn_ribbon_recom domain-containing protein	NA
UHGV-0049946_46	eggNOG-mapper	1378168.N510_01584	resolvase	NA
UHGV-0049946_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA