UHGV-0049960

Genome information

Genome length 34,144 bps

CDS count 51

Completeness 81.24% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049960
vOTU ID	vOTU-039439
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_65592
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.8
Jumbo phage	No

Genome content
Genome length	34,144 bps
GC content	40.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.76%
Average CDS length	632.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049960_1	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0049960_1	UniRef90	UniRef90_A0A7X2XHL8	NA	NA
UHGV-0049960_1	eggNOG-mapper	1009370.ALO_12696	NA	NA
UHGV-0049960_1	Pfam	PF06356	NA	DUF1064
UHGV-0049960_1	Structural annotation	PF06356	NA	NA
UHGV-0049960_9	PHROG	phrog_8684	NA	unknown function
UHGV-0049960_9	UniRef90	UniRef90_A0A7X2XHJ6	YopX domain-containing protein	NA
UHGV-0049960_9	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-0049960_9	Pfam	PF09643	YopX protein	YopX
UHGV-0049960_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0049960_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0049960_11	UniRef90	UniRef90_A0A412X6I8	Zinc ribbon domain-containing protein	NA
UHGV-0049960_11	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0049960_12	Structural annotation	PF02917, NF041482, COG1859	NA	NA
UHGV-0049960_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0049960_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0049960_15	UniRef90	UniRef90_UPI000F0C363F	single-stranded DNA-binding protein	NA
UHGV-0049960_15	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0049960_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0049960_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0049960_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0049960_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0049960_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0049960_17	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0049960_17	Structural annotation	PF13384	NA	NA
UHGV-0049960_18	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0049960_18	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0049960_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0049960_22	UniRef90	UniRef90_A0A843HSC6	DNA-packaging protein	NA
UHGV-0049960_22	eggNOG-mapper	935837.JAEK01000054_gene1463	DNA-packaging protein gp3	NA
UHGV-0049960_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0049960_22	Structural annotation	PF16677	NA	NA
UHGV-0049960_23	PHROG	phrog_5902	NA	unknown function
UHGV-0049960_23	UniRef90	UniRef90_UPI001032D579	terminase	NA
UHGV-0049960_23	eggNOG-mapper	1485543.JMME01000020_gene792	Terminase RNaseH-like domain	NA
UHGV-0049960_23	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0049960_23	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049960_25	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0049960_25	UniRef90	UniRef90_UPI0010329B07	portal protein	NA
UHGV-0049960_25	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0049960_25	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0049960_25	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0049960_26	PHROG	phrog_528	NA	unknown function
UHGV-0049960_26	eggNOG-mapper	568816.Acin_1833	NA	NA
UHGV-0049960_28	PHROG	phrog_212	major head protein	head and packaging
UHGV-0049960_28	UniRef90	UniRef90_Q775C7	Bbp17	NA
UHGV-0049960_28	eggNOG-mapper	360910.BAV0425	NA	NA
UHGV-0049960_28	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0049960_28	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0049960_30	PHROG	phrog_394	tail protein	tail
UHGV-0049960_30	eggNOG-mapper	1122963.AUHB01000020_gene2267	NA	NA
UHGV-0049960_30	Structural annotation	PF17212	NA	NA
UHGV-0049960_31	PHROG	phrog_376	tail protein	tail
UHGV-0049960_31	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0049960_31	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0049960_31	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0049960_31	Structural annotation	PF11134, PF13157, MF_03037, TIGR02658, COG4257	NA	NA
UHGV-0049960_33	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0049960_35	PHROG	phrog_4757	NA	unknown function
UHGV-0049960_35	eggNOG-mapper	1273103.NM10_08089	tail collar domain protein	NA
UHGV-0049960_35	COG	COG4675	Phage tail collar domain	NA
UHGV-0049960_37	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0049960_37	Structural annotation	PF14301	NA	NA
UHGV-0049960_39	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-0049960_40	PHROG	phrog_5867	endolysin	lysis
UHGV-0049960_40	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049960_40	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0049960_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0049960_40	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0049960_40	Structural annotation	MF_04111	NA	NA
UHGV-0049960_43	UniRef90	UniRef90_A0A412X6W3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0049960_43	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0049960_43	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-0049960_45	PHROG	phrog_9880	NA	unknown function
UHGV-0049960_45	UniRef90	UniRef90_A0A7X2XH87	MuF_C domain-containing protein	NA
UHGV-0049960_45	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0049960_45	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0049960_49	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-0049960_51	eggNOG-mapper	1378168.N510_03079	NA	NA