UHGV-0049964

Genome information

Genome length 15,315 bps

CDS count 22

Completeness 78.53% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0049964
vOTU ID	vOTU-024387
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_66564
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.12
Jumbo phage	No

Genome content
Genome length	15,315 bps
GC content	38.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	91.96%
Average CDS length	641.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0049964_4	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0049964_4	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0049964_4	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0049964_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-0049964_5	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0049964_5	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0049964_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0049964_5	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0049964_6	PHROG	phrog_2248	tail protein	tail
UHGV-0049964_6	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-0049964_6	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0049964_6	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0049964_6	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0049964_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0049964_7	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0049964_7	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0049964_7	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0049964_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0049964_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0049964_9	PHROG	phrog_291	endolysin	lysis
UHGV-0049964_9	UniRef90	UniRef90_UPI0018ABEB17	SH3 domain-containing protein	NA
UHGV-0049964_9	eggNOG-mapper	411460.RUMTOR_02294	Lysin motif	NA
UHGV-0049964_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0049964_9	COG	COG1388	LysM repeat	NA
UHGV-0049964_9	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0049964_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0049964_11	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0049964_11	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0049964_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0049964_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0049964_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0049964_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0049964_14	UniRef90	UniRef90_A0A843HF73	DNA-directed DNA polymerase	NA
UHGV-0049964_14	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0049964_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0049964_14	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0049964_15	UniRef90	UniRef90_A0A345MZF5	DNA polymerase	NA
UHGV-0049964_16	Structural annotation	PF17427	NA	NA
UHGV-0049964_17	Structural annotation	PF17548	NA	NA
UHGV-0049964_20	Pfam	PF20037	NA	DUF6440