UHGV-0050042

Genome information

Genome length 28,433 bps

CDS count 45

Completeness 73.71% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050042
vOTU ID	vOTU-025633
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64494
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.87
Jumbo phage	No

Genome content
Genome length	28,433 bps
GC content	44.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.89%
Average CDS length	604.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050042_1	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0050042_1	UniRef90	UniRef90_C9LPA8	TIGR02217 family protein	NA
UHGV-0050042_1	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0050042_1	Pfam	PF09343	NA	DUF2460
UHGV-0050042_1	COG	COG5448	NA	NA
UHGV-0050042_1	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0050042_2	PHROG	phrog_12798	NA	unknown function
UHGV-0050042_2	UniRef90	UniRef90_A0A3B9DV14	TMP_3 domain-containing protein	NA
UHGV-0050042_2	eggNOG-mapper	1000569.HMPREF1040_0188	tape measure	NA
UHGV-0050042_2	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0050042_2	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0050042_2	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0050042_2	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-0050042_3	eggNOG-mapper	1000569.HMPREF1040_0189	NA	NA
UHGV-0050042_4	Structural annotation	PF11836	NA	NA
UHGV-0050042_5	PHROG	phrog_1407	major tail protein	tail
UHGV-0050042_5	UniRef90	UniRef90_A0A380NJ51	Predicted secreted protein	NA
UHGV-0050042_5	eggNOG-mapper	1000569.HMPREF1040_0191	Phage tail tube protein	NA
UHGV-0050042_5	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0050042_5	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0050042_5	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0050042_5	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0050042_6	eggNOG-mapper	568816.Acin_1232	NA	NA
UHGV-0050042_6	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0050042_7	eggNOG-mapper	568816.Acin_1233	NA	NA
UHGV-0050042_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0050042_8	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-0050042_8	eggNOG-mapper	706434.HMPREF9429_00523	Phage virion morphogenesis	NA
UHGV-0050042_8	COG	COG5005	NA	NA
UHGV-0050042_8	Structural annotation	TIGR01725	NA	NA
UHGV-0050042_9	PHROG	phrog_15682	NA	unknown function
UHGV-0050042_9	UniRef90	UniRef90_J5WK97	Rho termination factor, N-terminal domain protein	NA
UHGV-0050042_9	eggNOG-mapper	1122918.KB907248_gene4497	NA	NA
UHGV-0050042_10	PHROG	phrog_212	major head protein	head and packaging
UHGV-0050042_10	UniRef90	UniRef90_A0A7Z0TEG2	Phage capsid protein	NA
UHGV-0050042_10	eggNOG-mapper	1321779.HMPREF1984_01306	NA	NA
UHGV-0050042_10	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0050042_11	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0050042_11	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-0050042_11	Structural annotation	PF06810	NA	NA
UHGV-0050042_13	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0050042_13	UniRef90	UniRef90_R7PPR8	Ntox50 domain-containing protein	NA
UHGV-0050042_13	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0050042_13	Structural annotation	PF18451	NA	NA
UHGV-0050042_14	PHROG	phrog_145	portal protein	head and packaging
UHGV-0050042_14	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0050042_14	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0050042_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0050042_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050042_15	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0050042_15	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-0050042_15	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0050042_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0050042_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0050042_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0050042_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050042_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0050042_16	PHROG	phrog_6299	terminase small subunit	head and packaging
UHGV-0050042_16	eggNOG-mapper	1226322.HMPREF1545_03543	NA	NA
UHGV-0050042_16	Structural annotation	PF10668	NA	NA
UHGV-0050042_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0050042_17	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0050042_17	UniRef90	UniRef90_R6AVI7	ParB domain-containing protein	NA
UHGV-0050042_17	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0050042_17	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0050042_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0050042_17	COG	COG0863	DNA modification methylase	NA
UHGV-0050042_17	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0050042_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0050042_18	UniRef90	UniRef90_A0A101WQB3	ParB domain-containing protein	NA
UHGV-0050042_18	eggNOG-mapper	411483.FAEPRAA2165_01893	NA	NA
UHGV-0050042_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0050042_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0050042_18	COG	COG0863	DNA modification methylase	NA
UHGV-0050042_18	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0050042_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0050042_19	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0050042_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0050042_20	PHROG	phrog_1672	NA	unknown function
UHGV-0050042_20	UniRef90	UniRef90_A0A8B6ILJ5	NA	NA
UHGV-0050042_20	eggNOG-mapper	910314.HMPREF9220_1101	NA	NA
UHGV-0050042_21	PHROG	phrog_2776	NA	unknown function
UHGV-0050042_21	UniRef90	UniRef90_UPI001297AEBA	MmcB family DNA repair protein	NA
UHGV-0050042_21	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0050042_22	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0050042_22	UniRef90	UniRef90_A0A4R3K6Y3	Methyltransferase family protein	NA
UHGV-0050042_22	eggNOG-mapper	1476902.A0A067ZG57_9CAUD	methyltransferase activity	NA
UHGV-0050042_22	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0050042_22	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0050042_22	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0050042_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0050042_23	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0050042_23	UniRef90	UniRef90_E4L8C1	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0050042_23	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0050042_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0050042_23	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0050042_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0050042_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0050042_24	UniRef90	UniRef90_D4S859	Cytosine-specific methyltransferase	NA
UHGV-0050042_24	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-0050042_24	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0050042_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0050042_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0050042_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0050042_24	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0050042_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0050042_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0050042_26	UniRef90	UniRef90_F2BXW4	Single-stranded DNA-binding protein	NA
UHGV-0050042_26	eggNOG-mapper	888062.HMPREF9083_1032	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0050042_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0050042_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0050042_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0050042_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0050042_26	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0050042_28	Structural annotation	PF17887	NA	NA
UHGV-0050042_29	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0050042_29	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0050042_29	UniRef90	UniRef90_R6BBB2	DNA replication protein DnaC	NA
UHGV-0050042_29	eggNOG-mapper	1280706.AUJE01000003_gene2277	DNA-dependent DNA replication	NA
UHGV-0050042_29	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0050042_29	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0050042_29	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0050042_30	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0050042_30	UniRef90	UniRef90_A0A379CFM4	NA	NA
UHGV-0050042_30	eggNOG-mapper	762982.HMPREF9442_00538	COG NOG19076 non supervised orthologous group	NA
UHGV-0050042_30	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0050042_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0050042_30	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0050042_31	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0050042_31	UniRef90	UniRef90_UPI001CD7177D	NA	NA
UHGV-0050042_31	eggNOG-mapper	936573.HMPREF1147_1315	NA	NA
UHGV-0050042_31	Pfam	PF14359	NA	DUF4406
UHGV-0050042_31	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0050042_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0050042_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0050042_32	UniRef90	UniRef90_R6AVJ3	Phage RecT family recombinase	NA
UHGV-0050042_32	eggNOG-mapper	665959.HMPREF1013_00218	RecT family	NA
UHGV-0050042_32	Pfam	PF03837	RecT family	RecT
UHGV-0050042_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0050042_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0050042_32	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0050042_33	PHROG	phrog_14808	NA	unknown function
UHGV-0050042_33	eggNOG-mapper	679201.HMPREF9334_00304	NA	NA
UHGV-0050042_34	Structural annotation	PF17020, MF_01549, TIGR00405, COG1862	NA	NA
UHGV-0050042_35	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050042_35	UniRef90	UniRef90_R6BBB5	YqaJ viral recombinase family protein	NA
UHGV-0050042_35	eggNOG-mapper	910314.HMPREF9220_1109	YqaJ viral recombinase family protein	NA
UHGV-0050042_35	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0050042_35	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0050042_35	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0050042_35	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0050042_39	PHROG	phrog_14367	NA	unknown function
UHGV-0050042_39	UniRef90	UniRef90_E4L8C9	LysM domain-containing protein	NA
UHGV-0050042_39	COG	COG1388	LysM repeat	NA
UHGV-0050042_39	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0050042_41	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0050042_42	eggNOG-mapper	910314.HMPREF9220_0645	NA	NA
UHGV-0050042_42	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0050042_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0050042_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0050042_43	UniRef90	UniRef90_E4L8D2	Repressor LexA	NA
UHGV-0050042_43	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0050042_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0050042_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0050042_43	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0050042_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0050042_43	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0050042_44	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0050042_44	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050042_44	UniRef90	UniRef90_R6ICT3	Endonuclease	NA
UHGV-0050042_44	eggNOG-mapper	1262914.BN533_02018	type I restriction enzyme	NA
UHGV-0050042_44	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0050042_44	COG	COG4748	NA	NA
UHGV-0050042_44	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0050042_45	KOfam	K14059	int; integrase	NA
UHGV-0050042_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0050042_45	UniRef90	UniRef90_A0A6L6TSM6	Site-specific integrase	NA
UHGV-0050042_45	eggNOG-mapper	861450.HMPREF0080_02017	Belongs to the 'phage' integrase family	NA
UHGV-0050042_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0050042_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0050042_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0050042_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA