UHGV-0050134

Genome information

Genome length 22,194 bps

CDS count 29

Completeness 60.99% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050134
vOTU ID	vOTU-034030
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_54827
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.68
Jumbo phage	No

Genome content
Genome length	22,194 bps
GC content	44.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	95.99%
Average CDS length	736.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050134_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050134_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0050134_3	UniRef90	UniRef90_A0A8D9PDX0	Large terminase	NA
UHGV-0050134_3	eggNOG-mapper	1121382.JQKG01000014_gene290	DNA packaging	NA
UHGV-0050134_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0050134_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0050134_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050134_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0050134_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0050134_4	UniRef90	UniRef90_A0A8D9PDR4	Portal protein	NA
UHGV-0050134_4	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0050134_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0050134_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0050134_5	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0050134_5	UniRef90	UniRef90_A0A8D9PDR7	Minor structural protein	NA
UHGV-0050134_5	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0050134_5	Structural annotation	PF06810	NA	NA
UHGV-0050134_6	PHROG	phrog_422	major head protein	head and packaging
UHGV-0050134_6	UniRef90	UniRef90_A0A3P6K1X9	Lj928 prophage protein	NA
UHGV-0050134_6	eggNOG-mapper	1121335.Clst_0392	NA	NA
UHGV-0050134_6	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0050134_7	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0050134_7	UniRef90	UniRef90_A0A8D9UHB0	Putative head tail connector protein	NA
UHGV-0050134_7	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0050134_7	Structural annotation	PF20557	NA	NA
UHGV-0050134_8	Structural annotation	PF10665, TIGR01563	NA	NA
UHGV-0050134_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0050134_10	Structural annotation	PF12691	NA	NA
UHGV-0050134_11	PHROG	phrog_1407	major tail protein	tail
UHGV-0050134_11	UniRef90	UniRef90_A0A8D9UH75	Major tail protein	NA
UHGV-0050134_11	eggNOG-mapper	398512.JQKC01000005_gene5456	NA	NA
UHGV-0050134_11	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0050134_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0050134_12	Structural annotation	PF11836	NA	NA
UHGV-0050134_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0050134_14	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0050134_14	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0050134_14	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0050134_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0050134_15	PHROG	phrog_1194	NA	unknown function
UHGV-0050134_15	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0050134_15	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0050134_15	Pfam	PF20458	NA	DUF6711
UHGV-0050134_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0050134_16	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0050134_18	PHROG	phrog_16164	NA	unknown function
UHGV-0050134_18	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0050134_19	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0050134_21	PHROG	phrog_4105	NA	unknown function
UHGV-0050134_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0050134_22	PHROG	phrog_3088	amidase	lysis
UHGV-0050134_22	UniRef90	UniRef90_A0A6S6XBP2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0050134_22	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0050134_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0050134_22	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0050134_22	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0050134_23	PHROG	phrog_443	holin	lysis
UHGV-0050134_23	UniRef90	UniRef90_UPI001C10F455	holin	NA
UHGV-0050134_23	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0050134_23	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0050134_23	Structural annotation	PF16945	NA	NA
UHGV-0050134_24	UniRef90	UniRef90_A0A8D9PDZ3	Holliday junction resolvase	NA
UHGV-0050134_26	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0050134_26	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0050134_26	UniRef90	UniRef90_A0A7C6S767	DEAD/DEAH box helicase	NA
UHGV-0050134_26	eggNOG-mapper	272563.CD630_21800	Bacterial SNF2 helicase associated	NA
UHGV-0050134_26	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0050134_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0050134_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0050134_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0050134_26	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0050134_27	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0050134_27	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0050134_27	UniRef90	UniRef90_A0A7C6W992	DNA polymerase I	NA
UHGV-0050134_27	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0050134_27	PADLOC	drt-cluster58	DRT	DRT
UHGV-0050134_27	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0050134_27	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0050134_27	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0050134_27	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0050134_28	KOfam	K11175	purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]	NA
UHGV-0050134_28	PHROG	phrog_9240	cyanobacterial phosphoribosylglycinamide formyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0050134_28	UniRef90	UniRef90_A0A2D6F056	Formyl_trans_N domain-containing protein	NA
UHGV-0050134_28	eggNOG-mapper	334390.LAF_0130	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate	NA
UHGV-0050134_28	Pfam	PF00551	Formyl transferase	Formyl_trans_N
UHGV-0050134_28	COG	COG0299	Folate-dependent phosphoribosylglycinamide formyltransferase PurN	NA
UHGV-0050134_28	Structural annotation	PF00551, MF_01930, TIGR00655, COG0299	NA	NA