UHGV-0050148

Genome information

Genome length 19,676 bps

CDS count 36

Completeness 66.41% (medium-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050148
vOTU ID	vOTU-024496
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_42234
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.05
Jumbo phage	No

Genome content
Genome length	19,676 bps
GC content	61.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.95%
Average CDS length	500.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050148_1	PHROG	phrog_1526	NA	unknown function
UHGV-0050148_1	UniRef90	UniRef90_A0A123T5V6	NA	NA
UHGV-0050148_1	eggNOG-mapper	1214184.ALKY01000039_gene911	NA	NA
UHGV-0050148_2	PHROG	phrog_117	major tail protein	tail
UHGV-0050148_2	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0050148_2	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0050148_2	COG	COG5492	NA	NA
UHGV-0050148_2	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0050148_3	PHROG	phrog_123	tail terminator	connector
UHGV-0050148_3	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0050148_3	Structural annotation	PF06141	NA	NA
UHGV-0050148_4	PHROG	phrog_387	neck protein	connector
UHGV-0050148_4	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0050148_4	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0050148_5	PHROG	phrog_501	head closure Hc1	connector
UHGV-0050148_5	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0050148_5	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0050148_5	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0050148_6	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0050148_6	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0050148_6	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0050148_6	Pfam	PF09355	NA	Phage_Gp19
UHGV-0050148_6	Structural annotation	PF09355	NA	NA
UHGV-0050148_8	PHROG	phrog_32396	NA	unknown function
UHGV-0050148_8	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-0050148_8	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0050148_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0050148_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0050148_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0050148_9	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0050148_9	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0050148_9	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0050148_9	Structural annotation	PF14265	NA	NA
UHGV-0050148_10	PHROG	phrog_17688	NA	unknown function
UHGV-0050148_10	UniRef90	UniRef90_UPI001960D3D4	terminase large subunit	NA
UHGV-0050148_10	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0050148_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0050148_10	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0050148_11	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0050148_11	UniRef90	UniRef90_J5WFW3	CdiA_C domain-containing protein	NA
UHGV-0050148_11	eggNOG-mapper	936375.HMPREF1152_0675	NA	NA
UHGV-0050148_11	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0050148_11	Structural annotation	PF18451, TIGR01641	NA	NA
UHGV-0050148_12	PHROG	phrog_7104	NA	unknown function
UHGV-0050148_12	eggNOG-mapper	665950.HMPREF1025_02536	NA	NA
UHGV-0050148_13	PHROG	phrog_104	portal protein	head and packaging
UHGV-0050148_13	UniRef90	UniRef90_A0A1C5Y923	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0050148_13	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0050148_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0050148_14	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050148_14	UniRef90	UniRef90_E7FQH8	HNH endonuclease domain protein	NA
UHGV-0050148_14	eggNOG-mapper	1423775.BAMN01000011_gene610	HNH nucleases	NA
UHGV-0050148_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0050148_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050148_14	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0050148_15	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0050148_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0050148_16	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0050148_16	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0050148_19	UniRef90	UniRef90_UPI00195DD0EE	helix-turn-helix domain-containing protein	NA
UHGV-0050148_19	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0050148_19	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0050148_19	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0050148_19	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0050148_21	PHROG	phrog_3777	NA	unknown function
UHGV-0050148_21	UniRef90	UniRef90_UPI001D08CA4B	NA	NA
UHGV-0050148_21	eggNOG-mapper	665956.HMPREF1032_02664	NA	NA
UHGV-0050148_21	Pfam	PF12957	NA	DUF3846
UHGV-0050148_21	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0050148_21	Structural annotation	PF12957	NA	NA
UHGV-0050148_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0050148_22	PHROG	phrog_27290	NA	unknown function
UHGV-0050148_22	UniRef90	UniRef90_U4R0J0	ParB domain-containing protein	NA
UHGV-0050148_22	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0050148_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0050148_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0050148_22	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0050148_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0050148_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0050148_23	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-0050148_23	eggNOG-mapper	411463.EUBVEN_00461	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-0050148_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-0050148_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0050148_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0050148_24	Structural annotation	PF01157	NA	NA
UHGV-0050148_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0050148_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0050148_25	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0050148_25	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0050148_25	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0050148_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0050148_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0050148_25	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0050148_26	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0050148_26	UniRef90	UniRef90_UPI0011DDD220	helix-turn-helix domain-containing protein	NA
UHGV-0050148_26	eggNOG-mapper	796942.HMPREF9623_00442	NA	NA
UHGV-0050148_26	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0050148_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0050148_26	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0050148_28	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0050148_28	UniRef90	UniRef90_A0A1Y3RP45	HTH_17 domain-containing protein	NA
UHGV-0050148_28	eggNOG-mapper	1414720.CBYM010000001_gene815	DNA binding domain, excisionase family	NA
UHGV-0050148_28	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0050148_28	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0050148_28	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0050148_28	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0050148_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0050148_29	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0050148_29	UniRef90	UniRef90_A0A2N2CPV3	Transcriptional regulator	NA
UHGV-0050148_29	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0050148_29	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0050148_29	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0050148_29	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0050148_30	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0050148_30	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0050148_30	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0050148_30	eggNOG-mapper	1298920.KI911353_gene4386	Helix-turn-helix domain	NA
UHGV-0050148_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050148_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050148_32	Structural annotation	PF06034, NF010671	NA	NA
UHGV-0050148_35	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0050148_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0050148_35	UniRef90	UniRef90_A0A1S8TCC5	HTH-type transcriptional regulator Xre	NA
UHGV-0050148_35	eggNOG-mapper	1415774.U728_3780	helix-turn-helix	NA
UHGV-0050148_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050148_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050148_35	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA
UHGV-0050148_36	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0050148_36	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0050148_36	UniRef90	UniRef90_A0A7C9H3B0	BRCT domain-containing protein	NA
UHGV-0050148_36	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0050148_36	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0050148_36	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0050148_36	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0050148_36	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0050148_36	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA