UHGV-0050162

Genome information

Genome length 34,156 bps

CDS count 46

Completeness 94.61% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050162
vOTU ID	vOTU-059925
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_31160
BioSample	SAMEA2161311
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.98
Jumbo phage	No

Genome content
Genome length	34,156 bps
GC content	58.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.94%
Average CDS length	684.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050162_2	PHROG	phrog_123	tail terminator	connector
UHGV-0050162_2	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0050162_2	Structural annotation	PF06141	NA	NA
UHGV-0050162_3	PHROG	phrog_117	major tail protein	tail
UHGV-0050162_3	UniRef90	UniRef90_A0A1Q6T308	Phage tail protein	NA
UHGV-0050162_3	eggNOG-mapper	875454.BAEW01000017_gene1590	domain, Protein	NA
UHGV-0050162_3	COG	COG5492	NA	NA
UHGV-0050162_3	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0050162_4	PHROG	phrog_1526	NA	unknown function
UHGV-0050162_4	UniRef90	UniRef90_A0A0E4H642	NA	NA
UHGV-0050162_4	eggNOG-mapper	1321784.HMPREF1987_01080	NA	NA
UHGV-0050162_5	PHROG	phrog_1633	NA	unknown function
UHGV-0050162_5	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-0050162_5	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0050162_5	Pfam	PF17318	NA	DUF5361
UHGV-0050162_5	Structural annotation	PF17318	NA	NA
UHGV-0050162_6	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0050162_6	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0050162_6	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0050162_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0050162_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0050162_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0050162_6	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0050162_7	PHROG	phrog_36410	NA	unknown function
UHGV-0050162_7	UniRef90	UniRef90_UPI000C7AD134	phage tail family protein	NA
UHGV-0050162_7	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0050162_7	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0050162_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0050162_8	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0050162_8	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0050162_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0050162_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0050162_9	PHROG	phrog_9534	head protein	head and packaging
UHGV-0050162_9	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0050162_9	Structural annotation	PF21567	NA	NA
UHGV-0050162_10	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0050162_10	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0050162_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0050162_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0050162_12	PHROG	phrog_291	endolysin	lysis
UHGV-0050162_12	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0050162_12	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0050162_12	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0050162_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0050162_12	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0050162_12	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0050162_13	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0050162_13	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0050162_14	PHROG	phrog_13256	NA	unknown function
UHGV-0050162_14	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0050162_15	KOfam	K14059	int; integrase	NA
UHGV-0050162_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0050162_15	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-0050162_15	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0050162_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0050162_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0050162_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0050162_16	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0050162_16	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0050162_16	UniRef90	UniRef90_A0A1Q6T334	Toxin HicA	NA
UHGV-0050162_16	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0050162_16	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0050162_16	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0050162_16	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0050162_17	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0050162_17	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0050162_17	UniRef90	UniRef90_A0A1Q6T3W5	HicB family protein	NA
UHGV-0050162_17	eggNOG-mapper	718252.FP2_04880	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0050162_17	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0050162_17	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0050162_17	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0050162_18	eggNOG-mapper	1280668.ATVT01000017_gene1594	NA	NA
UHGV-0050162_18	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0050162_19	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0050162_19	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0050162_19	UniRef90	UniRef90_A0A1Q6T3H9	HTH cro/C1-type domain-containing protein	NA
UHGV-0050162_19	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0050162_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050162_19	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0050162_20	UniRef90	UniRef90_UPI00163C0D53	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0050162_20	Structural annotation	PF05973, TIGR02683, COG3657	NA	NA
UHGV-0050162_21	PHROG	phrog_38135	NA	unknown function
UHGV-0050162_21	UniRef90	UniRef90_A0A1Q6T359	NA	NA
UHGV-0050162_21	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-0050162_21	Pfam	PF14020	NA	DUF4236
UHGV-0050162_21	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0050162_21	Structural annotation	PF14020	NA	NA
UHGV-0050162_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0050162_22	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0050162_22	UniRef90	UniRef90_A0A1Q6T3E1	HTH cro/C1-type domain-containing protein	NA
UHGV-0050162_22	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0050162_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050162_22	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0050162_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0050162_22	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0050162_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0050162_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0050162_23	UniRef90	UniRef90_A0A367GFH2	Transcriptional regulator	NA
UHGV-0050162_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050162_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0050162_23	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0050162_24	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA
UHGV-0050162_26	PHROG	phrog_10280	NA	unknown function
UHGV-0050162_26	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-0050162_27	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0050162_27	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0050162_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0050162_28	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0050162_28	Pfam	PF05772	NinB protein	NinB
UHGV-0050162_28	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0050162_29	PHROG	phrog_7566	NA	unknown function
UHGV-0050162_29	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0050162_31	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0050162_31	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0050162_31	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0050162_32	PHROG	phrog_1029	NA	unknown function
UHGV-0050162_32	UniRef90	UniRef90_T0TFF0	NA	NA
UHGV-0050162_32	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0050162_32	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0050162_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0050162_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0050162_33	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-0050162_33	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0050162_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0050162_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0050162_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0050162_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0050162_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0050162_34	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0050162_34	UniRef90	UniRef90_UPI000F632BBD	helix-turn-helix domain-containing protein	NA
UHGV-0050162_34	eggNOG-mapper	862514.HMPREF0623_0270	Helix-turn-helix domain	NA
UHGV-0050162_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0050162_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0050162_34	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0050162_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0050162_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0050162_35	UniRef90	UniRef90_D1PNB9	DNA helicase	NA
UHGV-0050162_35	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0050162_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0050162_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0050162_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0050162_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0050162_36	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0050162_36	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0050162_36	UniRef90	UniRef90_A0A1Q6T3I8	AAA_31 domain-containing protein	NA
UHGV-0050162_36	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0050162_36	Pfam	PF13614	AAA domain	AAA_31
UHGV-0050162_36	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0050162_36	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0050162_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0050162_37	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0050162_37	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0050162_37	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0050162_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0050162_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0050162_37	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0050162_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0050162_38	UniRef90	UniRef90_A0A2V2FTX8	Sigma70_r4 domain-containing protein	NA
UHGV-0050162_38	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0050162_38	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0050162_39	PHROG	phrog_21498	NA	unknown function
UHGV-0050162_39	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0050162_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0050162_39	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0050162_41	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050162_41	UniRef90	UniRef90_UPI0018971728	HNH endonuclease	NA
UHGV-0050162_41	eggNOG-mapper	1203606.HMPREF1526_01332	HNH nucleases	NA
UHGV-0050162_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0050162_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050162_42	PHROG	phrog_1066	NA	unknown function
UHGV-0050162_42	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-0050162_42	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0050162_43	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0050162_43	UniRef90	UniRef90_C4GAS7	Putative phage terminase, large subunit	NA
UHGV-0050162_43	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0050162_43	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0050162_43	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0050162_43	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0050162_43	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0050162_44	PHROG	phrog_12	portal protein	head and packaging
UHGV-0050162_44	UniRef90	UniRef90_A0A3B8U1I5	Phage portal protein	NA
UHGV-0050162_44	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0050162_44	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0050162_44	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0050162_44	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0050162_45	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0050162_45	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0050162_45	UniRef90	UniRef90_A0A355BJ21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0050162_45	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0050162_45	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0050162_45	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0050162_45	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0050162_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0050162_46	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0050162_46	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0050162_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0050162_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0050162_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0050162_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA