UHGV-0050478

Genome information

vOTU vOTU-020438

Genome length 19,852 bps

CDS count 37

Completeness 53.97% (medium-quality)

geNomad score 0.9633

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050478
vOTU ID	vOTU-020438
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_31244
BioSample	SAMEA2152521
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9633
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.89
Jumbo phage	No

Genome content
Genome length	19,852 bps
GC content	39.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.58%
Average CDS length	508.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050478_1	PHROG	phrog_422	major head protein	head and packaging
UHGV-0050478_1	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0050478_2	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0050478_2	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0050478_3	PHROG	phrog_2616	NA	unknown function
UHGV-0050478_3	Structural annotation	PF01281	NA	NA
UHGV-0050478_4	PHROG	phrog_3675	NA	unknown function
UHGV-0050478_4	UniRef90	UniRef90_UPI00189B0D52	dihydrolipoyl dehydrogenase	NA
UHGV-0050478_4	eggNOG-mapper	596329.HMPREF0631_0684	YjcQ protein	NA
UHGV-0050478_4	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0050478_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0050478_6	UniRef90	UniRef90_A0A412UNH8	Minor capsid protein	NA
UHGV-0050478_6	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0050478_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0050478_6	COG	COG2369	NA	NA
UHGV-0050478_6	Structural annotation	PF06152	NA	NA
UHGV-0050478_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0050478_7	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0050478_7	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0050478_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0050478_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050478_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0050478_8	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0050478_8	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0050478_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050478_8	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0050478_9	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0050478_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050478_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050478_10	UniRef90	UniRef90_R5J7G4	Putative HNH endonuclease	NA
UHGV-0050478_10	eggNOG-mapper	1527693.A0A096XV21_9CAUD	HNH endonuclease	NA
UHGV-0050478_10	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0050478_10	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0050478_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0050478_10	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0050478_10	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0050478_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0050478_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0050478_11	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0050478_11	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0050478_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0050478_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0050478_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0050478_12	Structural annotation	TIGR01636	NA	NA
UHGV-0050478_13	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0050478_15	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0050478_15	Structural annotation	PF15597	NA	NA
UHGV-0050478_16	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050478_16	UniRef90	UniRef90_R6QZD0	HNH endonuclease	NA
UHGV-0050478_16	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0050478_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0050478_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050478_17	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050478_17	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0050478_17	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0050478_17	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0050478_17	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0050478_18	eggNOG-mapper	1280706.AUJE01000010_gene639	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0050478_20	Structural annotation	PF09889	NA	NA
UHGV-0050478_22	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0050478_22	UniRef90	UniRef90_UPI000C07D7A2	NA	NA
UHGV-0050478_22	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0050478_22	Pfam	PF06048	NA	DUF927
UHGV-0050478_22	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0050478_22	COG	COG5519	NA	NA
UHGV-0050478_22	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0050478_23	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0050478_23	PHROG	phrog_11992	NA	unknown function
UHGV-0050478_23	UniRef90	UniRef90_A0A358PLG9	DNA primase	NA
UHGV-0050478_23	eggNOG-mapper	1105031.HMPREF1141_1761	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0050478_23	PADLOC	drt-cluster192	DRT	DRT
UHGV-0050478_23	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0050478_23	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0050478_23	Structural annotation	PF01807	NA	NA
UHGV-0050478_25	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0050478_25	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0050478_25	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0050478_25	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0050478_25	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0050478_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0050478_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0050478_26	UniRef90	UniRef90_A0A3D0X741	Single-stranded DNA-binding protein	NA
UHGV-0050478_26	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0050478_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0050478_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0050478_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0050478_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0050478_26	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0050478_27	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050478_27	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-0050478_27	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0050478_27	Pfam	PF12684	NA	DUF3799
UHGV-0050478_27	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0050478_27	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0050478_28	PHROG	phrog_21613	NA	unknown function
UHGV-0050478_28	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0050478_29	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0050478_29	PHROG	phrog_1499	NA	unknown function
UHGV-0050478_29	UniRef90	UniRef90_A0A3D5PCB1	AAA_23 domain-containing protein	NA
UHGV-0050478_29	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0050478_29	Pfam	PF13476	AAA domain	AAA_23
UHGV-0050478_29	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0050478_29	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0050478_34	PHROG	phrog_6058	NA	unknown function
UHGV-0050478_34	Structural annotation	NF033787	NA	NA
UHGV-0050478_35	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA