UHGV-0050554

Genome information

Genome length 21,279 bps

CDS count 38

Completeness 53.19% (medium-quality)

geNomad score 0.9540

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050554
vOTU ID	vOTU-014916
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_49519
BioSample	SAMEA2162844
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9540
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.37
Jumbo phage	No

Genome content
Genome length	21,279 bps
GC content	41.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	86.11%
Average CDS length	484.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050554_1	PHROG	phrog_391	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0050554_1	UniRef90	UniRef90_A0A3A9EDW0	Helix-turn-helix domain-containing protein	NA
UHGV-0050554_1	eggNOG-mapper	1089553.Tph_c07620	Helix-turn-helix domain	NA
UHGV-0050554_1	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0050554_1	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0050554_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0050554_2	UniRef90	UniRef90_R7EML0	DNA-binding helix-turn-helix protein	NA
UHGV-0050554_2	eggNOG-mapper	1540257.JQMW01000004_gene448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0050554_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050554_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050554_2	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0050554_3	PHROG	phrog_4031	NA	unknown function
UHGV-0050554_3	UniRef90	UniRef90_R7EPX0	Peptidase_M78 domain-containing protein	NA
UHGV-0050554_3	eggNOG-mapper	411460.RUMTOR_00442	IrrE N-terminal-like domain	NA
UHGV-0050554_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0050554_4	eggNOG-mapper	994573.T472_0208860	NA	NA
UHGV-0050554_5	PHROG	phrog_11138	NA	unknown function
UHGV-0050554_5	UniRef90	UniRef90_A0A101GVW7	Sigma-70, region 4	NA
UHGV-0050554_5	eggNOG-mapper	411468.CLOSCI_00232	NA	NA
UHGV-0050554_5	Structural annotation	PF08281, MF_00962, TIGR02479, COG1595	NA	NA
UHGV-0050554_6	PHROG	phrog_7234	NA	unknown function
UHGV-0050554_6	eggNOG-mapper	935837.JAEK01000027_gene1669	NA	NA
UHGV-0050554_7	PHROG	phrog_408	NA	unknown function
UHGV-0050554_7	UniRef90	UniRef90_A0A658JNY7	rRNA biogenesis protein rrp5	NA
UHGV-0050554_7	eggNOG-mapper	1216932.CM240_0652	NA	NA
UHGV-0050554_8	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050554_8	UniRef90	UniRef90_A0A658JP50	NA	NA
UHGV-0050554_8	eggNOG-mapper	649747.HMPREF0083_00681	NA	NA
UHGV-0050554_8	Pfam	PF10926	NA	DUF2800
UHGV-0050554_8	COG	COG2887	RecB family exonuclease	NA
UHGV-0050554_8	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0050554_9	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0050554_9	UniRef90	UniRef90_R7EM54	Phage-associated protein	NA
UHGV-0050554_9	eggNOG-mapper	994573.T472_0208835	NA	NA
UHGV-0050554_9	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0050554_9	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0050554_11	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0050554_11	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0050554_11	UniRef90	UniRef90_A0A3E2B3W4	POLAc domain-containing protein	NA
UHGV-0050554_11	eggNOG-mapper	1121342.AUCO01000004_gene620	DNA polymerase	NA
UHGV-0050554_11	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0050554_11	Structural annotation	PF01612, MF_04101, NF038380, COG0749	NA	NA
UHGV-0050554_12	PHROG	phrog_18591	NA	unknown function
UHGV-0050554_12	eggNOG-mapper	641112.ACOK01000036_gene781	NA	NA
UHGV-0050554_13	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0050554_13	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0050554_13	UniRef90	UniRef90_E9SEX7	Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment)	NA
UHGV-0050554_13	eggNOG-mapper	641112.ACOK01000081_gene3168	resolvase	NA
UHGV-0050554_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0050554_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0050554_14	PHROG	phrog_8680	NA	unknown function
UHGV-0050554_14	UniRef90	UniRef90_UPI000D1060B5	NA	NA
UHGV-0050554_14	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0050554_14	Pfam	PF14386	NA	DUF4417
UHGV-0050554_14	Structural annotation	PF14386	NA	NA
UHGV-0050554_15	PHROG	phrog_9479	NA	unknown function
UHGV-0050554_15	UniRef90	UniRef90_A0A2N0UXN8	Ntox24 domain-containing protein	NA
UHGV-0050554_15	eggNOG-mapper	411489.CLOL250_02426	Transposase	NA
UHGV-0050554_15	Pfam	PF15529	Bacterial toxin 24	Ntox24
UHGV-0050554_15	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0050554_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0050554_16	UniRef90	UniRef90_R6S2J5	Phage minor capsid protein	NA
UHGV-0050554_16	eggNOG-mapper	1298920.KI911353_gene4855	NA	NA
UHGV-0050554_16	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0050554_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0050554_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0050554_17	UniRef90	UniRef90_A0A413WRQ0	Minor capsid protein	NA
UHGV-0050554_17	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0050554_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0050554_17	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0050554_17	Structural annotation	PF06152	NA	NA
UHGV-0050554_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0050554_19	eggNOG-mapper	585501.HMPREF6123_0836	NA	NA
UHGV-0050554_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0050554_20	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0050554_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0050554_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0050554_21	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0050554_22	PHROG	phrog_8710	NA	unknown function
UHGV-0050554_22	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0050554_22	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0050554_23	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0050554_23	PHROG	phrog_2737	NA	unknown function
UHGV-0050554_23	UniRef90	UniRef90_A0A3R6LBS7	Type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0050554_23	eggNOG-mapper	591001.Acfer_0939	Addiction module antitoxin, RelB DinJ family	NA
UHGV-0050554_23	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0050554_23	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0050554_23	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0050554_23	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0050554_24	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0050554_24	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0050554_24	UniRef90	UniRef90_A0A415Y9Z7	Type II toxin-antitoxin system YafQ family toxin	NA
UHGV-0050554_24	eggNOG-mapper	1200567.JNKD01000098_gene810	Toxic component of a type II toxin-antitoxin (TA) system. A sequence-specific mRNA endoribonuclease that inhibits translation elongation and induces bacterial stasis. Cleavage occurs between the second and third residue of the Lys codon followed by a G or A (5'AAA(G A)3'), is reading-frame dependent and occurs within the 5' end of most mRNAs. Ribosome-binding confers the sequence specificity and reading frame-dependence. When overexpressed in liquid media YafQ partially inhibits protein synthesis, with a reduction in growth rate and colony growth rate. This effect is counteracted by coexpression with cognate antitoxin DinJ. YafQ and DinJ together bind their own promoter, and repress its expression	NA
UHGV-0050554_24	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0050554_24	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0050554_24	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0050554_24	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0050554_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0050554_25	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0050554_26	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0050554_26	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0050554_26	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0050554_26	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0050554_26	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0050554_27	PHROG	phrog_820	major tail protein	tail
UHGV-0050554_27	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0050554_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0050554_28	PHROG	phrog_8300	NA	unknown function
UHGV-0050554_28	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0050554_29	PHROG	phrog_8355	NA	unknown function
UHGV-0050554_29	UniRef90	UniRef90_UPI001F1300CC	bacteriophage Gp15 family protein	NA
UHGV-0050554_29	eggNOG-mapper	1282664.H354_06706	NA	NA
UHGV-0050554_30	PHROG	phrog_10292	NA	unknown function
UHGV-0050554_30	UniRef90	UniRef90_R6R348	TM2 domain protein	NA
UHGV-0050554_30	eggNOG-mapper	556261.HMPREF0240_02202	TM2 domain	NA
UHGV-0050554_30	Pfam	PF05154	TM2 domain	TM2
UHGV-0050554_30	COG	COG2314	NA	NA
UHGV-0050554_32	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0050554_32	UniRef90	UniRef90_R6MSP9	Phage-related protein-like protein	NA
UHGV-0050554_32	eggNOG-mapper	717606.PaecuDRAFT_3132	Phage-related minor tail protein	NA
UHGV-0050554_32	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0050554_33	PHROG	phrog_1194	NA	unknown function
UHGV-0050554_33	UniRef90	UniRef90_R6RCL6	Gp18	NA
UHGV-0050554_33	eggNOG-mapper	1117108.PAALTS15_13512	NA	NA
UHGV-0050554_34	PHROG	phrog_6616	tail protein	tail
UHGV-0050554_34	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0050554_35	PHROG	phrog_1863	NA	unknown function
UHGV-0050554_35	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0050554_35	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0050554_36	PHROG	phrog_443	holin	lysis
UHGV-0050554_36	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0050554_36	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0050554_36	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0050554_36	Structural annotation	PF16945	NA	NA
UHGV-0050554_37	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0050554_38	KOfam	K07273	acm; lysozyme	NA
UHGV-0050554_38	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0050554_38	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0050554_38	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA