UHGV-0050662

Genome information

Genome length 33,595 bps

CDS count 51

Completeness 95.49% (high-quality)

geNomad score 0.9515

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050662
vOTU ID	vOTU-072359
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_53182
BioSample	SAMEA1967891
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9515
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.59
Jumbo phage	No

Genome content
Genome length	33,595 bps
GC content	36.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.51%
Average CDS length	593.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050662_1	UniRef90	UniRef90_R6NXZ9	Cna protein B-type domain	NA
UHGV-0050662_1	eggNOG-mapper	411459.RUMOBE_02245	NA	NA
UHGV-0050662_1	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0050662_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0050662_3	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0050662_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0050662_3	COG	COG2369	NA	NA
UHGV-0050662_4	eggNOG-mapper	1410653.JHVC01000001_gene1475	COG3209 Rhs family protein	NA
UHGV-0050662_4	COG	COG3209	NA	NA
UHGV-0050662_5	Structural annotation	PF12305	NA	NA
UHGV-0050662_6	KOfam	K14059	int; integrase	NA
UHGV-0050662_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0050662_6	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0050662_6	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0050662_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0050662_6	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0050662_6	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0050662_7	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0050662_7	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0050662_7	UniRef90	UniRef90_A0A1E7S2B4	HicB-like domain-containing protein	NA
UHGV-0050662_7	eggNOG-mapper	903814.ELI_3151	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0050662_7	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0050662_7	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0050662_7	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0050662_8	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0050662_8	UniRef90	UniRef90_A0A7X2NEB3	Addiction module toxin, HicA family	NA
UHGV-0050662_8	eggNOG-mapper	903814.ELI_3150	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0050662_8	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0050662_8	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0050662_8	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0050662_9	eggNOG-mapper	795955.AFRW01000079_gene238	TM2 domain	NA
UHGV-0050662_9	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0050662_9	COG	COG2314	NA	NA
UHGV-0050662_10	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0050662_11	PHROG	phrog_1914	NA	unknown function
UHGV-0050662_11	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0050662_11	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0050662_11	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0050662_11	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0050662_11	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0050662_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0050662_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0050662_12	UniRef90	UniRef90_UPI00056F899A	transcriptional regulator	NA
UHGV-0050662_12	eggNOG-mapper	1211844.CBLM010000016_gene1522	Peptidase S24-like	NA
UHGV-0050662_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050662_12	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0050662_12	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0050662_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0050662_13	UniRef90	UniRef90_A0A367GFH2	Transcriptional regulator	NA
UHGV-0050662_13	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0050662_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0050662_13	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0050662_17	PHROG	phrog_585	NA	unknown function
UHGV-0050662_17	UniRef90	UniRef90_A0A851IGZ3	NA	NA
UHGV-0050662_17	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0050662_17	Pfam	PF10711	NA	DUF2513
UHGV-0050662_17	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0050662_19	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0050662_25	PHROG	phrog_8470	NA	unknown function
UHGV-0050662_25	UniRef90	UniRef90_A0A1I4ZKY0	PcfJ-like protein	NA
UHGV-0050662_25	eggNOG-mapper	397291.C804_06548	PcfJ-like protein	NA
UHGV-0050662_25	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0050662_25	Structural annotation	PF14284	NA	NA
UHGV-0050662_26	PHROG	phrog_15609	NA	unknown function
UHGV-0050662_26	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0050662_26	Pfam	PF11300	NA	DUF3102
UHGV-0050662_26	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0050662_28	PHROG	phrog_24518	NA	unknown function
UHGV-0050662_28	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0050662_29	PHROG	phrog_824	NA	unknown function
UHGV-0050662_29	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0050662_29	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0050662_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0050662_29	Structural annotation	PF08774	NA	NA
UHGV-0050662_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0050662_31	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0050662_31	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0050662_32	Structural annotation	TIGR01636	NA	NA
UHGV-0050662_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050662_33	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0050662_33	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0050662_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0050662_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050662_34	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0050662_34	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0050662_34	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0050662_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0050662_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0050662_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0050662_35	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0050662_35	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0050662_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0050662_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0050662_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0050662_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0050662_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0050662_36	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0050662_36	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0050662_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0050662_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0050662_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0050662_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0050662_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0050662_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0050662_37	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0050662_37	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0050662_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0050662_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0050662_37	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0050662_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0050662_38	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0050662_38	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0050662_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0050662_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0050662_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0050662_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0050662_39	PHROG	phrog_749	NA	unknown function
UHGV-0050662_39	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0050662_39	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0050662_40	PHROG	phrog_19734	NA	unknown function
UHGV-0050662_40	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0050662_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0050662_41	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0050662_41	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0050662_42	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0050662_42	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0050662_42	Structural annotation	TIGR01725	NA	NA
UHGV-0050662_43	PHROG	phrog_88	major tail protein	tail
UHGV-0050662_43	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0050662_43	eggNOG-mapper	411470.RUMGNA_02319	COG NOG11304 non supervised orthologous group	NA
UHGV-0050662_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0050662_43	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0050662_44	Structural annotation	PF11836	NA	NA
UHGV-0050662_46	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0050662_46	PHROG	phrog_5218	NA	unknown function
UHGV-0050662_46	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0050662_46	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0050662_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0050662_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0050662_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0050662_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0050662_47	UniRef90	UniRef90_UPI00073F69EF	phage tail family protein	NA
UHGV-0050662_47	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0050662_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0050662_48	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0050662_48	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0050662_48	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-0050662_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0050662_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0050662_48	COG	COG1511	NA	NA
UHGV-0050662_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0050662_49	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0050662_49	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0050662_51	KOfam	K16511	mecA1_2; adapter protein MecA 1/2	NA
UHGV-0050662_51	eggNOG-mapper	428125.CLOLEP_01180	NA	NA
UHGV-0050662_51	Pfam	PF05389	Negative regulator of genetic competence (MecA)	MecA