UHGV-0050670

Genome information

Genome length 37,930 bps

CDS count 52

Completeness 99.50% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050670
vOTU ID	vOTU-067261
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_36715
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.37
Jumbo phage	No

Genome content
Genome length	37,930 bps
GC content	29.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.75%
Average CDS length	686.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050670_1	KOfam	K01866	YARS, tyrS; tyrosyl-tRNA synthetase [EC:6.1.1.1]	NA
UHGV-0050670_1	PHROG	phrog_9270	tyrosyl-tRNA synthetase	DNA, RNA and nucleotide metabolism
UHGV-0050670_1	UniRef90	UniRef90_R5J6Z4	Tyrosine--tRNA ligase	NA
UHGV-0050670_1	eggNOG-mapper	869209.Tresu_1504	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)	NA
UHGV-0050670_1	Pfam	PF00579	tRNA synthetases class I (W and Y)	tRNA-synt_1b
UHGV-0050670_1	Pfam	PF01479	S4 domain	S4
UHGV-0050670_1	NCBIFam	TIGR00234.1	tyrosine--tRNA ligase	NA
UHGV-0050670_1	COG	COG0162	Tyrosyl-tRNA synthetase	NA
UHGV-0050670_1	HAMAP	MF_02006	Tyrosine--tRNA ligase [tyrS]	NA
UHGV-0050670_1	Structural annotation	PF00579, PF16714, MF_02006, TIGR00234, COG0162	NA	NA
UHGV-0050670_2	PHROG	phrog_7566	NA	unknown function
UHGV-0050670_2	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0050670_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0050670_3	PHROG	phrog_894	endolysin	lysis
UHGV-0050670_3	UniRef90	UniRef90_A0A843H2N1	Peptidoglycan-binding protein	NA
UHGV-0050670_3	eggNOG-mapper	903814.ELI_2548	Peptidase M15	NA
UHGV-0050670_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0050670_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0050670_3	COG	COG3108	NA	NA
UHGV-0050670_3	Structural annotation	PF08291, PF01471, COG3108	NA	NA
UHGV-0050670_4	PHROG	phrog_13256	NA	unknown function
UHGV-0050670_6	PHROG	phrog_372	tail protein	tail
UHGV-0050670_6	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0050670_6	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0050670_6	Pfam	PF05895	NA	DUF859
UHGV-0050670_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0050670_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG5608	NA	NA
UHGV-0050670_7	PHROG	phrog_21973	tail protein	tail
UHGV-0050670_7	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-0050670_8	PHROG	phrog_31411	NA	unknown function
UHGV-0050670_8	eggNOG-mapper	1131462.DCF50_p1798	NA	NA
UHGV-0050670_8	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0050670_11	eggNOG-mapper	445971.ANASTE_00721	NA	NA
UHGV-0050670_11	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0050670_12	PHROG	phrog_13046	NA	unknown function
UHGV-0050670_12	Structural annotation	PF20387	NA	NA
UHGV-0050670_14	eggNOG-mapper	78344.BIGA_0457	NA	NA
UHGV-0050670_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0050670_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-0050670_16	eggNOG-mapper	445971.ANASTE_00716	NA	NA
UHGV-0050670_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0050670_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050670_18	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0050670_18	UniRef90	UniRef90_A0A0M2NDA4	Phage terminase, large subunit	NA
UHGV-0050670_18	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0050670_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0050670_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050670_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0050670_19	UniRef90	UniRef90_UPI0014940E84	helix-turn-helix domain-containing protein	NA
UHGV-0050670_19	eggNOG-mapper	1449126.JQKL01000046_gene2071	NA	NA
UHGV-0050670_19	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0050670_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0050670_21	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0050670_21	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0050670_21	UniRef90	UniRef90_A0A350S1Q4	RNA-splicing ligase RtcB	NA
UHGV-0050670_21	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0050670_21	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0050670_21	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0050670_21	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0050670_22	Structural annotation	PF15456	NA	NA
UHGV-0050670_23	PHROG	phrog_20735	NA	unknown function
UHGV-0050670_23	UniRef90	UniRef90_R5A140	RNA_ligase domain-containing protein	NA
UHGV-0050670_23	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-0050670_23	Structural annotation	PF09414, MF_04150, TIGR01209, COG1423	NA	NA
UHGV-0050670_31	PHROG	phrog_625	NA	unknown function
UHGV-0050670_31	UniRef90	UniRef90_A0A395V9H0	ASCH domain-containing protein	NA
UHGV-0050670_31	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0050670_31	Structural annotation	PF12961	NA	NA
UHGV-0050670_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0050670_37	UniRef90	UniRef90_UPI000CF8C1EE	NA	NA
UHGV-0050670_37	eggNOG-mapper	525255.HMPREF0077_0413	NA	NA
UHGV-0050670_37	Pfam	PF06356	NA	DUF1064
UHGV-0050670_37	Structural annotation	PF06356	NA	NA
UHGV-0050670_38	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0050670_38	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0050670_38	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0050670_38	Structural annotation	PF05772	NA	NA
UHGV-0050670_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0050670_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0050670_39	UniRef90	UniRef90_R6SXG9	Single-stranded DNA-binding protein	NA
UHGV-0050670_39	eggNOG-mapper	941639.BCO26_2955	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0050670_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0050670_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0050670_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0050670_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0050670_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0050670_42	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050670_42	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0050670_42	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0050670_42	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0050670_43	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0050670_43	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0050670_43	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0050670_43	Pfam	PF06378	NA	DUF1071
UHGV-0050670_43	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0050670_46	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0050670_46	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0050670_46	eggNOG-mapper	1234679.BN424_1564	Replication initiation and membrane attachment	NA
UHGV-0050670_46	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0050670_46	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0050670_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0050670_46	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0050670_47	PHROG	phrog_6058	NA	unknown function
UHGV-0050670_47	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0050670_47	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0050670_47	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0050670_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0050670_48	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0050670_48	UniRef90	UniRef90_UPI00177C904A	helix-turn-helix domain-containing protein	NA
UHGV-0050670_48	eggNOG-mapper	438780.D2KRD7_9CAUD	sequence-specific DNA binding	NA
UHGV-0050670_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050670_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0050670_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0050670_49	UniRef90	UniRef90_A0A7U9GP11	HTH cro/C1-type domain-containing protein	NA
UHGV-0050670_49	eggNOG-mapper	458233.MCCL_1543	Peptidase S24-like	NA
UHGV-0050670_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0050670_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0050670_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0050670_50	PHROG	phrog_87	metallo-protease	other
UHGV-0050670_50	UniRef90	UniRef90_A0A3B8SNC0	Peptidase_M78 domain-containing protein	NA
UHGV-0050670_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0050670_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0050670_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0050670_52	KOfam	K14059	int; integrase	NA
UHGV-0050670_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0050670_52	UniRef90	UniRef90_R7NIV8	Site-specific recombinase phage integrase family	NA
UHGV-0050670_52	eggNOG-mapper	698758.AXY_01580	Phage integrase family	NA
UHGV-0050670_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0050670_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0050670_52	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA