UHGV-0050723

Genome information

Genome length 25,212 bps

CDS count 39

Completeness 70.11% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050723
vOTU ID	vOTU-025838
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_49237
BioSample	SAMEA2156675
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.33
Jumbo phage	No

Genome content
Genome length	25,212 bps
GC content	62.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.91%
Average CDS length	591.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050723_1	KOfam	K00134	GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]	NA
UHGV-0050723_1	PHROG	phrog_21942	NA	unknown function
UHGV-0050723_1	UniRef90	UniRef90_A0A3D4ZKH5	Type I glyceraldehyde-3-phosphate dehydrogenase (Fragment)	NA
UHGV-0050723_1	eggNOG-mapper	679937.Bcop_0944	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	NA
UHGV-0050723_1	Pfam	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	Gp_dh_C
UHGV-0050723_1	COG	COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	NA
UHGV-0050723_2	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0050723_2	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0050723_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0050723_7	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0050723_7	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0050723_8	PHROG	phrog_21357	endolysin	lysis
UHGV-0050723_8	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0050723_8	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0050723_8	Pfam	PF05257	CHAP domain	CHAP
UHGV-0050723_8	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0050723_8	COG	COG1388	LysM repeat	NA
UHGV-0050723_8	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0050723_9	PHROG	phrog_13256	NA	unknown function
UHGV-0050723_9	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0050723_10	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0050723_10	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0050723_11	PHROG	phrog_4105	NA	unknown function
UHGV-0050723_13	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0050723_13	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0050723_15	PHROG	phrog_13589	NA	unknown function
UHGV-0050723_15	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0050723_16	PHROG	phrog_31538	NA	unknown function
UHGV-0050723_17	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0050723_19	PHROG	phrog_32744	NA	unknown function
UHGV-0050723_19	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0050723_19	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0050723_21	PHROG	phrog_23464	NA	unknown function
UHGV-0050723_21	UniRef90	UniRef90_A0A3D5KEY0	Phage tail tape measure protein (Fragment)	NA
UHGV-0050723_21	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0050723_21	COG	COG5412	Phage-related protein	NA
UHGV-0050723_21	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0050723_23	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0050723_24	PHROG	phrog_88	major tail protein	tail
UHGV-0050723_24	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0050723_24	eggNOG-mapper	1519439.JPJG01000037_gene949	phage major tail protein, phi13 family	NA
UHGV-0050723_24	COG	COG5492	NA	NA
UHGV-0050723_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0050723_25	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0050723_25	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0050723_25	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0050723_25	Structural annotation	TIGR01725	NA	NA
UHGV-0050723_26	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0050723_26	Structural annotation	PF05657	NA	NA
UHGV-0050723_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-0050723_27	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0050723_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0050723_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0050723_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0050723_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0050723_28	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-0050723_28	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-0050723_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0050723_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0050723_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0050723_29	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-0050723_29	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0050723_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0050723_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0050723_29	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0050723_30	PHROG	phrog_16951	NA	unknown function
UHGV-0050723_30	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0050723_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0050723_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0050723_31	UniRef90	UniRef90_UPI0013EF1526	phage portal protein	NA
UHGV-0050723_31	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0050723_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0050723_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0050723_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0050723_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0050723_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0050723_33	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0050723_33	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0050723_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0050723_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0050723_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0050723_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0050723_34	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0050723_34	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0050723_34	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0050723_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0050723_34	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0050723_34	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0050723_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0050723_35	PHROG	phrog_21498	NA	unknown function
UHGV-0050723_35	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0050723_35	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0050723_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0050723_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0050723_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0050723_35	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0050723_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050723_36	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0050723_36	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0050723_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0050723_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050723_36	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0050723_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0050723_37	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0050723_37	Structural annotation	PF11726	NA	NA