UHGV-0050763

Genome information

Genome length 21,496 bps

CDS count 37

Completeness 52.22% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050763
vOTU ID	vOTU-017431
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_61215
BioSample	SAMEA2338724
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.17
Jumbo phage	No

Genome content
Genome length	21,496 bps
GC content	53.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.62%
Average CDS length	546.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050763_1	PHROG	phrog_1129	holin	lysis
UHGV-0050763_1	UniRef90	UniRef90_A0A3D5IBP7	Enolase	NA
UHGV-0050763_1	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0050763_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0050763_1	Structural annotation	PF06946	NA	NA
UHGV-0050763_2	PHROG	phrog_6473	NA	unknown function
UHGV-0050763_2	eggNOG-mapper	1160721.RBI_I00624	NA	NA
UHGV-0050763_3	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0050763_3	UniRef90	UniRef90_UPI00189FDDA6	minor capsid protein	NA
UHGV-0050763_3	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0050763_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0050763_3	COG	COG2369	NA	NA
UHGV-0050763_3	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0050763_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0050763_4	UniRef90	UniRef90_A0A3D2GX93	Portal protein	NA
UHGV-0050763_4	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0050763_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0050763_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0050763_5	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0050763_5	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0050763_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050763_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0050763_6	UniRef90	UniRef90_UPI001C107040	PBSX family phage terminase large subunit	NA
UHGV-0050763_6	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0050763_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0050763_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0050763_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0050763_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050763_6	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0050763_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0050763_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0050763_7	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0050763_7	UniRef90	UniRef90_A0A3R6SKK4	Terminase small subunit	NA
UHGV-0050763_7	eggNOG-mapper	1029718.SFBM_0378	Terminase small subunit	NA
UHGV-0050763_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0050763_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0050763_7	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0050763_8	PHROG	phrog_12517	NA	unknown function
UHGV-0050763_8	UniRef90	UniRef90_UPI001B9CE7F5	chromosome partitioning protein ParB	NA
UHGV-0050763_8	eggNOG-mapper	794903.OPIT5_03875	N-4 methylation of cytosine	NA
UHGV-0050763_8	PADLOC	MTase_II_00162	Type II methyltransferase	RM
UHGV-0050763_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0050763_8	COG	COG0863	DNA modification methylase	NA
UHGV-0050763_12	Structural annotation	TIGR03655	NA	NA
UHGV-0050763_13	Pfam	PF04448	NA	DUF551
UHGV-0050763_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0050763_14	UniRef90	UniRef90_UPI000368796A	NA	NA
UHGV-0050763_14	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0050763_14	Pfam	PF07374	NA	DUF1492
UHGV-0050763_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0050763_14	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0050763_15	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0050763_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0050763_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0050763_16	UniRef90	UniRef90_A0A349YQ92	IstB_IS21 domain-containing protein	NA
UHGV-0050763_16	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0050763_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0050763_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0050763_16	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0050763_17	PHROG	phrog_11769	NA	unknown function
UHGV-0050763_17	UniRef90	UniRef90_A0A0M4FNH0	Replication protein	NA
UHGV-0050763_17	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0050763_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0050763_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0050763_17	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0050763_19	PHROG	phrog_4973	NA	unknown function
UHGV-0050763_19	UniRef90	UniRef90_UPI00164C643F	helix-turn-helix domain-containing protein	NA
UHGV-0050763_19	eggNOG-mapper	1038869.AXAN01000006_gene942	Helix-turn-helix domain	NA
UHGV-0050763_19	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0050763_19	Structural annotation	PF14090, TIGR00373, COG4344	NA	NA
UHGV-0050763_20	PHROG	phrog_6721	NA	unknown function
UHGV-0050763_20	eggNOG-mapper	411473.RUMCAL_00916	NA	NA
UHGV-0050763_20	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0050763_22	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0050763_22	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0050763_22	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0050763_22	Pfam	PF06356	NA	DUF1064
UHGV-0050763_22	Structural annotation	PF06356	NA	NA
UHGV-0050763_23	PHROG	phrog_18107	NA	unknown function
UHGV-0050763_23	eggNOG-mapper	1304866.K413DRAFT_0826	NA	NA
UHGV-0050763_23	Structural annotation	PF05037	NA	NA
UHGV-0050763_24	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0050763_24	UniRef90	UniRef90_A0A843H8D6	ATP-binding protein	NA
UHGV-0050763_24	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0050763_24	Pfam	PF13479	AAA domain	AAA_24
UHGV-0050763_24	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0050763_25	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0050763_25	UniRef90	UniRef90_A0A843H617	Siphovirus Gp157 family protein	NA
UHGV-0050763_25	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0050763_25	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0050763_25	Structural annotation	PF05565	NA	NA
UHGV-0050763_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0050763_27	PHROG	phrog_5696	NA	unknown function
UHGV-0050763_27	UniRef90	UniRef90_UPI0004E278B8	N-6 DNA methylase	NA
UHGV-0050763_27	eggNOG-mapper	428125.CLOLEP_01378	N-6 DNA Methylase	NA
UHGV-0050763_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0050763_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0050763_27	Structural annotation	PF05185, TIGR00497, COG0286	NA	NA
UHGV-0050763_29	UniRef90	UniRef90_A0A1F1H878	Repressor	NA
UHGV-0050763_29	eggNOG-mapper	562981.HMPREF0428_01421	NA	NA
UHGV-0050763_29	Pfam	PF05339	NA	DUF739
UHGV-0050763_29	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0050763_29	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0050763_33	Structural annotation	PF07358	NA	NA
UHGV-0050763_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0050763_34	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0050763_34	UniRef90	UniRef90_A0A0W7TND2	HTH cro/C1-type domain-containing protein	NA
UHGV-0050763_34	eggNOG-mapper	903814.ELI_0076	Helix-turn-helix XRE-family like proteins	NA
UHGV-0050763_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050763_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0050763_34	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0050763_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0050763_36	PHROG	phrog_95	integrase	integration and excision
UHGV-0050763_36	UniRef90	UniRef90_UPI00189E6FB8	recombinase family protein	NA
UHGV-0050763_36	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-0050763_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0050763_36	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0050763_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0050763_36	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0050763_37	KOfam	K25156	evrA; viologen exporter family transport system ATP-binding protein	NA
UHGV-0050763_37	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0050763_37	UniRef90	UniRef90_A0A1Q6PUP0	ABC transporter	NA
UHGV-0050763_37	eggNOG-mapper	1280663.ATVR01000049_gene3070	ATPases associated with a variety of cellular activities	NA
UHGV-0050763_37	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0050763_37	COG	COG4586	NA	NA