UHGV-0050767

Genome information

Genome length 41,296 bps

CDS count 67

Completeness 62.89% (medium-quality)

geNomad score 0.9567

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050767
vOTU ID	vOTU-021614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_65392
BioSample	SAMEA2338776
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9567
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.11
Jumbo phage	No

Genome content
Genome length	41,296 bps
GC content	41.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	88.16%
Average CDS length	546.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050767_2	KOfam	K07686	uhpA; two-component system, NarL family, uhpT operon response regulator UhpA	NA
UHGV-0050767_2	UniRef90	UniRef90_UPI001E63A3BF	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0050767_2	eggNOG-mapper	762984.HMPREF9445_00144	helix_turn_helix, Lux Regulon	NA
UHGV-0050767_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0050767_2	Structural annotation	PF00196, COG2771	NA	NA
UHGV-0050767_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0050767_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0050767_4	UniRef90	UniRef90_UPI0018980A71	recombinase RecT	NA
UHGV-0050767_4	eggNOG-mapper	1121100.JCM6294_519	RecT family	NA
UHGV-0050767_4	Pfam	PF03837	RecT family	RecT
UHGV-0050767_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0050767_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0050767_4	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0050767_5	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050767_5	UniRef90	UniRef90_UPI00189B15FD	YqaJ viral recombinase family protein	NA
UHGV-0050767_5	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-0050767_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0050767_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0050767_7	Pfam	PF01816	Leucine rich repeat variant	LRV
UHGV-0050767_7	Structural annotation	PF13646, MF_03101, NF007244, COG1413	NA	NA
UHGV-0050767_9	PHROG	phrog_19572	NA	unknown function
UHGV-0050767_9	UniRef90	UniRef90_UPI00189ABE28	NA	NA
UHGV-0050767_9	eggNOG-mapper	1124780.ANNU01000020_gene3274	NA	NA
UHGV-0050767_9	Pfam	PF14902	NA	DUF4494
UHGV-0050767_9	Structural annotation	PF14902, COG2157	NA	NA
UHGV-0050767_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0050767_10	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0050767_10	UniRef90	UniRef90_UPI0018984E82	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0050767_10	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0050767_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0050767_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0050767_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0050767_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0050767_10	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0050767_11	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0050767_11	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0050767_11	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0050767_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0050767_13	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0050767_13	UniRef90	UniRef90_UPI001E294BC7	phage regulatory protein/antirepressor Ant	NA
UHGV-0050767_13	eggNOG-mapper	1105171.H2A0H2_9CAUD	DNA binding	NA
UHGV-0050767_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0050767_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0050767_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0050767_13	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0050767_16	PHROG	phrog_16304	NA	unknown function
UHGV-0050767_16	UniRef90	UniRef90_UPI00189BA9B9	NA	NA
UHGV-0050767_16	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-0050767_16	Pfam	PF19808	NA	DUF6291
UHGV-0050767_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050767_17	eggNOG-mapper	1347393.HG726022_gene3716	NA	NA
UHGV-0050767_17	Pfam	PF20338	NA	DUF6633
UHGV-0050767_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0050767_18	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0050767_18	UniRef90	UniRef90_UPI001898193D	site-specific DNA-methyltransferase	NA
UHGV-0050767_18	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0050767_18	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0050767_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0050767_18	COG	COG0863	DNA modification methylase	NA
UHGV-0050767_18	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0050767_21	UniRef90	UniRef90_UPI00189B6E3C	NYN domain-containing protein	NA
UHGV-0050767_21	eggNOG-mapper	565033.GACE_0244	NYN domain	NA
UHGV-0050767_21	Pfam	PF01936	NYN domain	NYN
UHGV-0050767_21	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0050767_22	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0050767_22	PHROG	phrog_5696	NA	unknown function
UHGV-0050767_22	UniRef90	UniRef90_A0A6L5XAE6	N-6 DNA methylase	NA
UHGV-0050767_22	eggNOG-mapper	908612.HMPREF9720_2193	COG NOG31012 non supervised orthologous group	NA
UHGV-0050767_22	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0050767_22	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0050767_22	Structural annotation	COG0286	NA	NA
UHGV-0050767_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0050767_23	UniRef90	UniRef90_UPI00189DC102	helix-turn-helix domain containing protein	NA
UHGV-0050767_23	eggNOG-mapper	457424.BFAG_02415	Helix-turn-helix of insertion element transposase	NA
UHGV-0050767_23	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0050767_23	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0050767_23	Structural annotation	PF07141	NA	NA
UHGV-0050767_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050767_24	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0050767_24	UniRef90	UniRef90_UPI00189FAE03	terminase large subunit	NA
UHGV-0050767_24	eggNOG-mapper	1122981.AUME01000026_gene530	Terminase RNAseH like domain	NA
UHGV-0050767_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0050767_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0050767_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050767_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0050767_25	PHROG	phrog_28240	NA	unknown function
UHGV-0050767_25	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0050767_25	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0050767_26	PHROG	phrog_33245	NA	unknown function
UHGV-0050767_26	eggNOG-mapper	1122931.AUAE01000005_gene3264	NA	NA
UHGV-0050767_26	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0050767_27	PHROG	phrog_31246	NA	unknown function
UHGV-0050767_27	eggNOG-mapper	742767.HMPREF9456_03374	NA	NA
UHGV-0050767_28	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0050767_29	PHROG	phrog_33698	NA	unknown function
UHGV-0050767_29	eggNOG-mapper	1236514.BAKL01000015_gene1630	NA	NA
UHGV-0050767_29	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0050767_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0050767_30	UniRef90	UniRef90_UPI00189DC102	helix-turn-helix domain containing protein	NA
UHGV-0050767_30	eggNOG-mapper	457424.BFAG_02415	Helix-turn-helix of insertion element transposase	NA
UHGV-0050767_30	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0050767_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0050767_30	Structural annotation	PF07141	NA	NA
UHGV-0050767_31	PHROG	phrog_17790	NA	unknown function
UHGV-0050767_31	UniRef90	UniRef90_A0A174QG70	Mor transcription activator domain-containing protein	NA
UHGV-0050767_31	eggNOG-mapper	1121098.HMPREF1534_03351	NA	NA
UHGV-0050767_33	eggNOG-mapper	906968.Trebr_1128	NA	NA
UHGV-0050767_34	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0050767_34	PHROG	phrog_11900	NA	unknown function
UHGV-0050767_34	UniRef90	UniRef90_K0X6M8	Fido domain-containing protein	NA
UHGV-0050767_34	eggNOG-mapper	742726.HMPREF9448_02005	Fic/DOC family	NA
UHGV-0050767_34	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0050767_34	COG	COG3177	Fic family protein	NA
UHGV-0050767_34	Structural annotation	PF02661, TIGR02613, COG3177	NA	NA
UHGV-0050767_35	UniRef90	UniRef90_UPI0018A12243	helix-turn-helix domain-containing protein	NA
UHGV-0050767_35	eggNOG-mapper	445970.ALIPUT_01205	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0050767_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0050767_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050767_35	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0050767_37	PHROG	phrog_1086	NA	unknown function
UHGV-0050767_37	UniRef90	UniRef90_A0A3N2KH24	NA	NA
UHGV-0050767_37	eggNOG-mapper	742726.HMPREF9448_02001	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0050767_37	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0050767_37	Structural annotation	PF10902	NA	NA
UHGV-0050767_40	PHROG	phrog_38780	NA	unknown function
UHGV-0050767_40	eggNOG-mapper	357276.EL88_08370	NA	NA
UHGV-0050767_41	PHROG	phrog_21217	NA	unknown function
UHGV-0050767_41	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-0050767_42	PHROG	phrog_37138	NA	unknown function
UHGV-0050767_42	eggNOG-mapper	1236514.BAKL01000015_gene1623	NA	NA
UHGV-0050767_43	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0050767_43	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-0050767_43	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0050767_44	PHROG	phrog_24616	NA	unknown function
UHGV-0050767_44	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0050767_44	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0050767_44	Structural annotation	PF20459	NA	NA
UHGV-0050767_45	Structural annotation	PF21226	NA	NA
UHGV-0050767_47	eggNOG-mapper	1203611.KB894547_gene2599	NA	NA
UHGV-0050767_48	PHROG	phrog_19698	NA	unknown function
UHGV-0050767_48	eggNOG-mapper	449673.BACSTE_02149	NA	NA
UHGV-0050767_49	Structural annotation	PF04892, NF008028, COG5544	NA	NA
UHGV-0050767_50	PHROG	phrog_1281	NA	unknown function
UHGV-0050767_50	UniRef90	UniRef90_A0A4S2FP91	NA	NA
UHGV-0050767_50	eggNOG-mapper	393921.HQ45_06855	Phage-associated protein	NA
UHGV-0050767_50	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0050767_50	COG	COG3600	NA	NA
UHGV-0050767_50	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0050767_51	UniRef90	UniRef90_UPI0010756222	MgtC/SapB family protein	NA
UHGV-0050767_52	eggNOG-mapper	1392498.JQLH01000001_gene1253	NA	NA
UHGV-0050767_53	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0050767_53	PHROG	phrog_894	endolysin	lysis
UHGV-0050767_53	UniRef90	UniRef90_UPI0018977466	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0050767_53	eggNOG-mapper	449673.BACSTE_00851	Peptidase M15	NA
UHGV-0050767_53	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0050767_53	COG	COG3108	NA	NA
UHGV-0050767_53	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0050767_54	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0050767_55	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0050767_56	PHROG	phrog_16490	NA	unknown function
UHGV-0050767_56	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0050767_56	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-0050767_57	PHROG	phrog_31654	NA	unknown function
UHGV-0050767_57	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-0050767_58	PHROG	phrog_28898	NA	unknown function
UHGV-0050767_58	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0050767_58	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0050767_58	Structural annotation	PF10781	NA	NA
UHGV-0050767_60	PHROG	phrog_38431	NA	unknown function
UHGV-0050767_60	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0050767_60	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0050767_61	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0050767_61	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0050767_64	UniRef90	UniRef90_UPI000623B17C	helix-turn-helix domain-containing protein	NA
UHGV-0050767_64	Structural annotation	PF01381, TIGR03070, COG1813	NA	NA
UHGV-0050767_65	KOfam	K07082	K07082; UPF0755 protein	NA
UHGV-0050767_65	UniRef90	UniRef90_K0XA14	Endolytic murein transglycosylase	NA
UHGV-0050767_65	eggNOG-mapper	742726.HMPREF9448_01054	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	NA
UHGV-0050767_65	Pfam	PF02618	YceG-like family	YceG
UHGV-0050767_65	NCBIFam	TIGR00247.1	endolytic transglycosylase MltG	NA
UHGV-0050767_65	COG	COG1559	Endolytic transglycosylase MltG, terminates peptidoglycan polymerization	NA
UHGV-0050767_65	HAMAP	MF_02065	Endolytic murein transglycosylase [mltG]	NA
UHGV-0050767_67	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0050767_67	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0050767_67	UniRef90	UniRef90_W0EQW7	Replicative DNA helicase	NA
UHGV-0050767_67	eggNOG-mapper	742726.HMPREF9448_01056	Participates in initiation and elongation during chromosome replication	NA
UHGV-0050767_67	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0050767_67	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0050767_67	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0050767_67	COG	COG0305	Replicative DNA helicase	NA
UHGV-0050767_67	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA