UHGV-0050814

Genome information

Genome length 11,553 bps

CDS count 19

Completeness 75.98% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050814
vOTU ID	vOTU-036221
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_63883
BioSample	SAMEA2338834
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.12
Jumbo phage	No

Genome content
Genome length	11,553 bps
GC content	37.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	87.60%
Average CDS length	535.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050814_1	eggNOG-mapper	411490.ANACAC_03134	COG COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0050814_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0050814_2	KOfam	K06381	spoIID; stage II sporulation protein D	NA
UHGV-0050814_2	UniRef90	UniRef90_A0A6N2T5A9	Amidase enhancer	NA
UHGV-0050814_2	eggNOG-mapper	1232447.BAHW02000055_gene3238	stage II sporulation protein D	NA
UHGV-0050814_2	Pfam	PF08486	Stage II sporulation protein	SpoIID
UHGV-0050814_2	NCBIFam	TIGR02669.1	SpoIID/LytB domain-containing protein	NA
UHGV-0050814_2	COG	COG2385	Peptidoglycan hydrolase (amidase) enhancer domain SpoIID	NA
UHGV-0050814_3	eggNOG-mapper	272559.BF9343_2235	NA	NA
UHGV-0050814_4	eggNOG-mapper	272559.BF9343_2236	NA	NA
UHGV-0050814_8	PHROG	phrog_874	NA	unknown function
UHGV-0050814_8	eggNOG-mapper	742767.HMPREF9456_03386	NA	NA
UHGV-0050814_8	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0050814_10	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0050814_10	PHROG	phrog_12862	NA	unknown function
UHGV-0050814_10	UniRef90	UniRef90_A0A833EV14	Methyltransferase	NA
UHGV-0050814_10	eggNOG-mapper	755731.Clo1100_1145	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0050814_10	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0050814_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0050814_10	COG	COG0863	DNA modification methylase	NA
UHGV-0050814_10	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0050814_11	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0050814_11	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0050814_11	UniRef90	UniRef90_A0A414WS63	Methyltransferase	NA
UHGV-0050814_11	eggNOG-mapper	411901.BACCAC_01182	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0050814_11	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0050814_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0050814_11	COG	COG0863	DNA modification methylase	NA
UHGV-0050814_11	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0050814_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0050814_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0050814_12	UniRef90	UniRef90_A0A833B1M3	ATP-binding protein	NA
UHGV-0050814_12	eggNOG-mapper	1121097.JCM15093_3228	DNA-dependent DNA replication	NA
UHGV-0050814_12	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0050814_12	Structural annotation	PF01695, MF_01158, NF005304, COG1484	NA	NA
UHGV-0050814_13	UniRef90	UniRef90_UPI0013D5F453	helix-turn-helix domain-containing protein	NA
UHGV-0050814_13	eggNOG-mapper	1121101.HMPREF1532_02580	NA	NA
UHGV-0050814_13	Structural annotation	PF13463, NF038251, COG3355	NA	NA
UHGV-0050814_15	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0050814_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0050814_15	UniRef90	UniRef90_A0A641Q6W5	DEAD/DEAH box helicase	NA
UHGV-0050814_15	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-0050814_15	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0050814_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0050814_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0050814_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0050814_15	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0050814_16	KOfam	K00524	nrdJ; ribonucleotide reductase, class II [EC:1.17.4.2]	NA
UHGV-0050814_16	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050814_16	UniRef90	UniRef90_I9FEL9	HintN domain-containing protein	NA
UHGV-0050814_16	eggNOG-mapper	411477.PARMER_02075	Bacteriophage Lambda NinG protein	NA
UHGV-0050814_16	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0050814_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050814_16	Structural annotation	PF01079, NF038136, COG1372	NA	NA
UHGV-0050814_17	eggNOG-mapper	1236514.BAKL01000040_gene3201	NA	NA
UHGV-0050814_18	PHROG	phrog_11501	NA	unknown function
UHGV-0050814_18	UniRef90	UniRef90_F3QQV3	Conserved domain protein	NA
UHGV-0050814_18	eggNOG-mapper	762982.HMPREF9442_00546	NA	NA
UHGV-0050814_18	Structural annotation	PF10065, COG5532	NA	NA