UHGV-0050852

Genome information

Genome length 38,701 bps

CDS count 47

Completeness 83.52% (medium-quality)

geNomad score 0.9514

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050852
vOTU ID	vOTU-039591
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_50682
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9514
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.9
Jumbo phage	No

Genome content
Genome length	38,701 bps
GC content	46.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	86.73%
Average CDS length	716.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050852_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0050852_1	UniRef90	UniRef90_A0A348ZBT0	RNA_pol_sigma70 domain-containing protein	NA
UHGV-0050852_1	eggNOG-mapper	1262914.BN533_01942	NA	NA
UHGV-0050852_1	Structural annotation	PF07374, MF_00674, TIGR02984, COG1342	NA	NA
UHGV-0050852_2	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0050852_2	UniRef90	UniRef90_A0A139CFP9	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0050852_2	eggNOG-mapper	1262914.BN533_00789	NA	NA
UHGV-0050852_2	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0050852_2	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0050852_3	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0050852_3	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0050852_3	UniRef90	UniRef90_UPI000F0C09AB	phage terminase large subunit family protein	NA
UHGV-0050852_3	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0050852_3	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0050852_3	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0050852_3	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0050852_3	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0050852_3	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0050852_4	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0050852_4	UniRef90	UniRef90_UPI000D1063A5	NA	NA
UHGV-0050852_4	eggNOG-mapper	1262914.BN533_00292	NA	NA
UHGV-0050852_4	Pfam	PF19645	NA	DUF6148
UHGV-0050852_4	Structural annotation	PF19645	NA	NA
UHGV-0050852_5	PHROG	phrog_21	portal protein	head and packaging
UHGV-0050852_5	UniRef90	UniRef90_A0A1M6SL22	Phage portal protein, lambda family	NA
UHGV-0050852_5	eggNOG-mapper	1262914.BN533_00784	Phage portal protein	NA
UHGV-0050852_5	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0050852_5	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0050852_5	COG	COG5511	Phage capsid protein	NA
UHGV-0050852_5	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0050852_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0050852_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0050852_6	UniRef90	UniRef90_UPI000F0C7B06	Clp protease ClpP	NA
UHGV-0050852_6	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0050852_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0050852_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0050852_6	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0050852_7	PHROG	phrog_49	head decoration	head and packaging
UHGV-0050852_7	UniRef90	UniRef90_UPI000F0CF163	head decoration protein	NA
UHGV-0050852_7	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-0050852_7	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0050852_7	Structural annotation	PF02924	NA	NA
UHGV-0050852_8	PHROG	phrog_29	major head protein	head and packaging
UHGV-0050852_8	UniRef90	UniRef90_UPI000F0CF09A	major capsid protein	NA
UHGV-0050852_8	eggNOG-mapper	1273103.NM10_03136	Phage major capsid protein E	NA
UHGV-0050852_8	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0050852_8	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0050852_9	Structural annotation	PF10208	NA	NA
UHGV-0050852_10	PHROG	phrog_2551	minor tail protein	tail
UHGV-0050852_10	UniRef90	UniRef90_R6I9C8	Sugar ABC transporter ATP-binding protein	NA
UHGV-0050852_10	eggNOG-mapper	1262914.BN533_01003	Product inferred by homology to UniProt	NA
UHGV-0050852_10	Structural annotation	PF13856	NA	NA
UHGV-0050852_11	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0050852_11	UniRef90	UniRef90_A0A259U590	Prophage minor tail protein Z	NA
UHGV-0050852_11	eggNOG-mapper	1262914.BN533_00997	Prophage minor tail protein Z (GPZ)	NA
UHGV-0050852_11	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0050852_11	Structural annotation	PF06763	NA	NA
UHGV-0050852_12	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0050852_12	eggNOG-mapper	1262914.BN533_00996	NA	NA
UHGV-0050852_12	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0050852_13	PHROG	phrog_4089	NA	unknown function
UHGV-0050852_13	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-0050852_14	KOfam	K06907	NA	NA
UHGV-0050852_14	PHROG	phrog_23	tail sheath	tail
UHGV-0050852_14	UniRef90	UniRef90_A0A2A2IKV4	Phage tail protein	NA
UHGV-0050852_14	eggNOG-mapper	572547.Amico_1114	tail sheath protein	NA
UHGV-0050852_14	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0050852_14	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0050852_15	KOfam	K06908	NA	NA
UHGV-0050852_15	PHROG	phrog_55	head closure	connector
UHGV-0050852_15	UniRef90	UniRef90_R6J7N4	Phage major tail tube protein	NA
UHGV-0050852_15	eggNOG-mapper	1262914.BN533_01373	tail tube protein	NA
UHGV-0050852_15	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0050852_15	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0050852_15	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0050852_16	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0050852_16	UniRef90	UniRef90_R6ILQ4	Mu-like prophage FluMu protein gp41	NA
UHGV-0050852_16	eggNOG-mapper	1262914.BN533_01372	NA	NA
UHGV-0050852_16	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0050852_16	Structural annotation	PF10109	NA	NA
UHGV-0050852_18	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0050852_18	UniRef90	UniRef90_A0A2A2IKN4	Phage tail tape measure protein	NA
UHGV-0050852_18	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-0050852_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0050852_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0050852_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0050852_19	UniRef90	UniRef90_R6ILQ9	Tail tape measure protein TIGR01760 family	NA
UHGV-0050852_19	eggNOG-mapper	1262914.BN533_01377	phage tail tape measure protein	NA
UHGV-0050852_19	COG	COG5412	Phage-related protein	NA
UHGV-0050852_20	PHROG	phrog_46	tail protein	tail
UHGV-0050852_20	UniRef90	UniRef90_R6IAK0	Phage Tail Protein X	NA
UHGV-0050852_20	eggNOG-mapper	1262914.BN533_01376	Phage Tail Protein X	NA
UHGV-0050852_20	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0050852_20	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0050852_20	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0050852_21	KOfam	K06905	NA	NA
UHGV-0050852_21	PHROG	phrog_52	tail protein	tail
UHGV-0050852_21	UniRef90	UniRef90_UPI001CD5459F	transcriptional regulator	NA
UHGV-0050852_21	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0050852_21	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0050852_21	COG	COG3500	NA	NA
UHGV-0050852_21	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0050852_22	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0050852_22	UniRef90	UniRef90_A0A6N7VMZ2	Phage baseplate assembly protein V	NA
UHGV-0050852_22	eggNOG-mapper	1262914.BN533_01719	Phage baseplate assembly protein V	NA
UHGV-0050852_22	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0050852_22	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0050852_22	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0050852_23	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0050852_23	UniRef90	UniRef90_A0A1Q6RAC4	PaaR repeat-containing protein	NA
UHGV-0050852_23	eggNOG-mapper	1280706.AUJE01000010_gene673	PAAR repeat-containing protein	NA
UHGV-0050852_23	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0050852_23	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0050852_23	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0050852_24	KOfam	K06906	NA	NA
UHGV-0050852_24	PHROG	phrog_76	tail protein	tail
UHGV-0050852_24	UniRef90	UniRef90_A0A6N7W1P7	Phage tail protein	NA
UHGV-0050852_24	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0050852_24	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0050852_24	COG	COG3499	NA	NA
UHGV-0050852_24	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0050852_25	KOfam	K06903	NA	NA
UHGV-0050852_25	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0050852_25	UniRef90	UniRef90_A0A348AJ14	Gene 25-like lysozyme	NA
UHGV-0050852_25	eggNOG-mapper	572547.Amico_1105	GPW Gp25 family protein	NA
UHGV-0050852_25	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0050852_25	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0050852_25	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0050852_26	PHROG	phrog_6	baseplate protein	tail
UHGV-0050852_26	UniRef90	UniRef90_UPI000F0CD01B	baseplate J/gp47 family protein	NA
UHGV-0050852_26	eggNOG-mapper	1262914.BN533_01712	Baseplate J-like protein	NA
UHGV-0050852_26	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0050852_26	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0050852_26	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0050852_27	PHROG	phrog_14404	baseplate protein	tail
UHGV-0050852_27	UniRef90	UniRef90_A0A2A2IJZ7	Phage tail protein I	NA
UHGV-0050852_27	eggNOG-mapper	1262914.BN533_01711	Phage tail protein (Tail_P2_I)	NA
UHGV-0050852_27	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0050852_27	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0050852_27	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0050852_27	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0050852_28	eggNOG-mapper	568816.Acin_1955	NA	NA
UHGV-0050852_28	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0050852_29	PHROG	phrog_31538	NA	unknown function
UHGV-0050852_29	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0050852_30	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0050852_30	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0050852_30	eggNOG-mapper	927704.SELR_16630	Phage tail-collar fibre protein	NA
UHGV-0050852_30	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0050852_30	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0050852_30	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0050852_31	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0050852_32	eggNOG-mapper	864563.HMPREF9166_0550	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0050852_32	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0050852_33	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0050852_33	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0050852_33	Pfam	PF14301	NA	DUF4376
UHGV-0050852_33	Structural annotation	PF14301	NA	NA
UHGV-0050852_34	KOfam	K14059	int; integrase	NA
UHGV-0050852_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0050852_34	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0050852_34	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0050852_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0050852_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0050852_34	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0050852_35	PHROG	phrog_13589	NA	unknown function
UHGV-0050852_35	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0050852_36	eggNOG-mapper	478749.BRYFOR_07557	tail collar domain protein	NA
UHGV-0050852_36	COG	COG4675	Phage tail collar domain	NA
UHGV-0050852_36	Structural annotation	PF18454, PF03256, COG5156	NA	NA
UHGV-0050852_37	PHROG	phrog_4105	NA	unknown function
UHGV-0050852_37	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0050852_39	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0050852_39	PHROG	phrog_435	endolysin	lysis
UHGV-0050852_39	UniRef90	UniRef90_UPI000F0CFF53	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0050852_39	eggNOG-mapper	1111454.HMPREF1250_0942	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0050852_39	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0050852_39	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0050852_39	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0050852_41	PHROG	phrog_21372	NA	unknown function
UHGV-0050852_41	UniRef90	UniRef90_A0A3C1IPT9	NA	NA
UHGV-0050852_41	eggNOG-mapper	1209989.TepiRe1_1922	NA	NA
UHGV-0050852_41	Pfam	PF11148	NA	DUF2922
UHGV-0050852_42	PHROG	phrog_20302	NA	unknown function
UHGV-0050852_42	eggNOG-mapper	573061.Clocel_3216	NA	NA
UHGV-0050852_42	Pfam	PF07872	NA	DUF1659
UHGV-0050852_43	PHROG	phrog_5867	endolysin	lysis
UHGV-0050852_43	UniRef90	UniRef90_A0A8B0KGQ0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0050852_43	eggNOG-mapper	1262914.BN533_02173	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0050852_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0050852_44	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0050852_44	UniRef90	UniRef90_A0A3C1IK59	HTH_16 domain-containing protein	NA
UHGV-0050852_44	eggNOG-mapper	626939.HMPREF9443_01468	Sigma-70, region 4	NA
UHGV-0050852_44	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0050852_44	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0050852_44	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0050852_45	UniRef90	UniRef90_A0A3C1IM49	XRE family transcriptional regulator	NA
UHGV-0050852_45	eggNOG-mapper	761193.Runsl_0924	sequence-specific DNA binding	NA
UHGV-0050852_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050852_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0050852_46	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0050852_46	PHROG	phrog_3689	DNA methyltransferase	other
UHGV-0050852_46	UniRef90	UniRef90_UPI001CBB0962	Eco57I restriction-modification methylase domain-containing protein	NA
UHGV-0050852_46	eggNOG-mapper	246199.CUS_5189	restriction endonuclease	NA
UHGV-0050852_46	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0050852_46	Pfam	PF07669	Eco57I restriction-modification methylase	Eco57I
UHGV-0050852_46	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0050852_47	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0050852_47	UniRef90	UniRef90_A0A839H919	DEAD/DEAH box helicase family protein	NA
UHGV-0050852_47	eggNOG-mapper	1605.Lani381_0510	Type III restriction enzyme, res subunit	NA
UHGV-0050852_47	PADLOC	REase_MTase_IIG_00031	Type IIG restriction enzyme-methyltransferase	RM
UHGV-0050852_47	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0050852_47	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0050852_47	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0050852_47	Structural annotation	PF04851, PF16203, MF_01821, TIGR04095, COG1061	NA	NA