UHGV-0050896

Genome information

Genome length 36,983 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050896
vOTU ID	vOTU-008396
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_35375
BioSample	SAMEA2143074
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.82
Jumbo phage	No

Genome content
Genome length	36,983 bps
GC content	42.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.89%
Average CDS length	583.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050896_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0050896_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0050896_1	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0050896_1	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0050896_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0050896_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0050896_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0050896_2	PHROG	phrog_7974	NA	unknown function
UHGV-0050896_2	UniRef90	UniRef90_A7B3P6	NA	NA
UHGV-0050896_2	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0050896_2	Pfam	PF14020	NA	DUF4236
UHGV-0050896_2	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0050896_2	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0050896_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0050896_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0050896_4	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0050896_4	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0050896_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050896_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050896_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0050896_7	PHROG	phrog_28292	NA	unknown function
UHGV-0050896_7	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0050896_7	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0050896_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0050896_8	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0050896_8	UniRef90	UniRef90_UPI0015706F54	phage regulatory protein/antirepressor Ant	NA
UHGV-0050896_8	eggNOG-mapper	262071.A3QSE0_9CAUD	DNA binding	NA
UHGV-0050896_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0050896_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0050896_8	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0050896_8	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0050896_9	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0050896_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0050896_12	PHROG	phrog_1499	NA	unknown function
UHGV-0050896_12	UniRef90	UniRef90_A0A2N5P5I0	AAA_23 domain-containing protein	NA
UHGV-0050896_12	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0050896_12	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0050896_12	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0050896_13	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0050896_13	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0050896_13	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0050896_13	Pfam	PF03837	RecT family	RecT
UHGV-0050896_13	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0050896_14	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050896_14	UniRef90	UniRef90_A0A2N5P5E1	NA	NA
UHGV-0050896_14	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0050896_14	Pfam	PF12684	NA	DUF3799
UHGV-0050896_14	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0050896_14	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0050896_15	PHROG	phrog_7566	NA	unknown function
UHGV-0050896_15	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0050896_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0050896_16	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0050896_16	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0050896_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0050896_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0050896_17	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0050896_17	UniRef90	UniRef90_A0A2N5P5D6	Phage_rep_org_N domain-containing protein	NA
UHGV-0050896_17	eggNOG-mapper	1462526.BN990_03905	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0050896_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0050896_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0050896_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0050896_17	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0050896_18	PHROG	phrog_25488	NA	unknown function
UHGV-0050896_18	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0050896_20	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0050896_21	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050896_21	UniRef90	UniRef90_A0A2N5NVP1	HNHc domain-containing protein	NA
UHGV-0050896_21	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0050896_21	Structural annotation	PF13392	NA	NA
UHGV-0050896_25	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0050896_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0050896_28	UniRef90	UniRef90_A0A3E4V8N2	Sigma70_r4 domain-containing protein	NA
UHGV-0050896_28	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0050896_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0050896_28	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0050896_29	PHROG	phrog_8680	NA	unknown function
UHGV-0050896_29	UniRef90	UniRef90_UPI001D046250	NA	NA
UHGV-0050896_29	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0050896_29	Pfam	PF14386	NA	DUF4417
UHGV-0050896_29	Structural annotation	PF14386	NA	NA
UHGV-0050896_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0050896_31	UniRef90	UniRef90_UPI001D05A70C	transposase	NA
UHGV-0050896_31	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0050896_31	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0050896_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0050896_31	Structural annotation	PF07141	NA	NA
UHGV-0050896_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050896_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0050896_32	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0050896_32	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0050896_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0050896_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050896_32	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0050896_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0050896_33	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0050896_33	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0050896_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0050896_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0050896_34	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0050896_34	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0050896_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0050896_34	COG	COG2369	NA	NA
UHGV-0050896_34	Structural annotation	PF06152	NA	NA
UHGV-0050896_35	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0050896_35	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0050896_36	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0050896_38	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0050896_38	Structural annotation	NF040910	NA	NA
UHGV-0050896_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0050896_39	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0050896_39	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0050896_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0050896_39	Structural annotation	PF06810	NA	NA
UHGV-0050896_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0050896_40	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0050896_40	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0050896_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0050896_41	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0050896_42	PHROG	phrog_3366	NA	unknown function
UHGV-0050896_42	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0050896_42	Pfam	PF20536	NA	DUF6751
UHGV-0050896_42	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0050896_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0050896_43	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0050896_43	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0050896_43	Structural annotation	PF11114	NA	NA
UHGV-0050896_44	PHROG	phrog_3266	tail completion	connector
UHGV-0050896_44	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0050896_44	Structural annotation	PF12691	NA	NA
UHGV-0050896_45	PHROG	phrog_3099	NA	unknown function
UHGV-0050896_45	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0050896_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0050896_46	PHROG	phrog_4450	NA	unknown function
UHGV-0050896_46	UniRef90	UniRef90_A0A416RQL6	AP endonuclease	NA
UHGV-0050896_46	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0050896_46	Pfam	PF20378	NA	DUF6673
UHGV-0050896_46	Structural annotation	PF20378	NA	NA
UHGV-0050896_47	PHROG	phrog_706	NA	unknown function
UHGV-0050896_47	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0050896_47	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0050896_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0050896_47	Structural annotation	PF06854	NA	NA
UHGV-0050896_48	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0050896_48	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0050896_48	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0050896_48	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0050896_48	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0050896_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0050896_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0050896_49	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0050896_49	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0050896_49	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0050896_49	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0050896_49	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0050896_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0050896_49	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0050896_50	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0050896_50	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0050896_50	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0050896_50	Structural annotation	PF14594, PF19081, MF_04116, TIGR01665, NF041894, COG4926	NA	NA
UHGV-0050896_51	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0050896_52	PHROG	phrog_10091	holin	lysis
UHGV-0050896_52	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0050896_52	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0050896_52	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0050896_52	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0050896_52	COG	COG5546	NA	NA
UHGV-0050896_52	Structural annotation	COG5546	NA	NA
UHGV-0050896_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0050896_54	PHROG	phrog_833	endolysin	lysis
UHGV-0050896_54	UniRef90	UniRef90_A0A396G4E2	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0050896_54	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0050896_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0050896_54	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0050896_54	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0050896_55	UniRef90	UniRef90_A0A3E4V8L0	XRE family transcriptional regulator	NA
UHGV-0050896_55	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0050896_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050896_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050896_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0050896_56	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0050896_56	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0050896_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050896_57	eggNOG-mapper	411470.RUMGNA_03785	NA	NA