UHGV-0050927

Genome information

Genome length 28,708 bps

CDS count 45

Completeness 66.33% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050927
vOTU ID	vOTU-025126
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_43210
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.21
Jumbo phage	No

Genome content
Genome length	28,708 bps
GC content	38.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.81%
Average CDS length	608.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050927_2	PHROG	phrog_6616	tail protein	tail
UHGV-0050927_2	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0050927_2	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0050927_3	PHROG	phrog_1194	NA	unknown function
UHGV-0050927_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0050927_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0050927_4	UniRef90	UniRef90_A0A1I2KTM2	Phage-related protein	NA
UHGV-0050927_4	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0050927_4	COG	COG1511	NA	NA
UHGV-0050927_5	PHROG	phrog_706	NA	unknown function
UHGV-0050927_5	UniRef90	UniRef90_UPI0011DC8B0C	Gp15 family bacteriophage protein	NA
UHGV-0050927_5	eggNOG-mapper	1304866.K413DRAFT_3045	Bacteriophage Gp15 protein	NA
UHGV-0050927_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0050927_5	Structural annotation	PF06854	NA	NA
UHGV-0050927_6	PHROG	phrog_11299	NA	unknown function
UHGV-0050927_6	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0050927_7	PHROG	phrog_3099	NA	unknown function
UHGV-0050927_7	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0050927_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0050927_8	PHROG	phrog_3266	tail completion	connector
UHGV-0050927_8	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0050927_8	Structural annotation	PF20765	NA	NA
UHGV-0050927_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0050927_9	UniRef90	UniRef90_A0A1M7NJ72	Minor capsid protein	NA
UHGV-0050927_9	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-0050927_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0050927_9	Structural annotation	PF11114	NA	NA
UHGV-0050927_10	PHROG	phrog_3366	NA	unknown function
UHGV-0050927_10	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0050927_10	Pfam	PF20536	NA	DUF6751
UHGV-0050927_10	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0050927_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0050927_12	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0050927_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0050927_13	UniRef90	UniRef90_UPI001D090FF5	phage major capsid protein	NA
UHGV-0050927_13	eggNOG-mapper	1235792.C808_05368	Phage capsid family	NA
UHGV-0050927_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0050927_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0050927_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0050927_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0050927_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0050927_14	eggNOG-mapper	1321782.HMPREF1986_02267	NA	NA
UHGV-0050927_14	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0050927_15	KOfam	K07584	NA	NA
UHGV-0050927_15	PHROG	phrog_4478	peptidase	other
UHGV-0050927_15	UniRef90	UniRef90_A0A2Z4UEY6	Ribosomal-processing cysteine protease Prp	NA
UHGV-0050927_15	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0050927_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0050927_15	COG	COG2868	NA	NA
UHGV-0050927_15	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0050927_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0050927_16	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0050927_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0050927_16	COG	COG2369	NA	NA
UHGV-0050927_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0050927_18	UniRef90	UniRef90_UPI001593C099	minor capsid protein	NA
UHGV-0050927_18	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0050927_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0050927_18	COG	COG2369	NA	NA
UHGV-0050927_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0050927_19	UniRef90	UniRef90_UPI00156E473F	phage portal protein	NA
UHGV-0050927_19	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0050927_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0050927_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0050927_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0050927_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0050927_20	UniRef90	UniRef90_UPI0015714730	PBSX family phage terminase large subunit	NA
UHGV-0050927_20	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0050927_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0050927_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0050927_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0050927_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0050927_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0050927_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0050927_21	UniRef90	UniRef90_A0A6B4XMY8	Phage portal protein	NA
UHGV-0050927_21	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0050927_21	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0050927_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0050927_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0050927_21	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0050927_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0050927_22	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0050927_22	Structural annotation	PF02996	NA	NA
UHGV-0050927_23	PHROG	phrog_625	NA	unknown function
UHGV-0050927_23	UniRef90	UniRef90_A0A413YU40	ASCH domain-containing protein	NA
UHGV-0050927_23	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0050927_23	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0050927_24	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0050927_25	PHROG	phrog_20593	NA	unknown function
UHGV-0050927_28	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050927_28	UniRef90	UniRef90_A0A2U2EKN9	HNHc domain-containing protein	NA
UHGV-0050927_28	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0050927_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0050927_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050927_28	Structural annotation	PF13395, TIGR02646, COG1403	NA	NA
UHGV-0050927_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0050927_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0050927_31	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0050927_31	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0050927_31	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0050927_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0050927_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0050927_31	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0050927_32	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0050927_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0050927_32	UniRef90	UniRef90_A0A356C6C6	DNA methylase N-4	NA
UHGV-0050927_32	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0050927_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0050927_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0050927_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0050927_32	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0050927_34	PHROG	phrog_7566	NA	unknown function
UHGV-0050927_34	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0050927_35	Structural annotation	PF02179, NF011863	NA	NA
UHGV-0050927_36	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0050927_36	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0050927_36	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-0050927_36	eggNOG-mapper	1121447.JONL01000002_gene2134	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0050927_36	Pfam	PF00075	RNase H	RNase_H
UHGV-0050927_36	COG	COG0328	Ribonuclease HI	NA
UHGV-0050927_36	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0050927_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0050927_37	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0050927_37	Structural annotation	PF21578	NA	NA
UHGV-0050927_44	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0050927_44	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0050927_44	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0050927_45	eggNOG-mapper	887929.HMP0721_1291	Peptidase S24-like	NA
UHGV-0050927_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050927_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA