UHGV-0050949

Genome information

Genome length 36,254 bps

CDS count 58

Completeness 96.54% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0050949
vOTU ID	vOTU-009924
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_46365
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.17
Jumbo phage	No

Genome content
Genome length	36,254 bps
GC content	39.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.65%
Average CDS length	582.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0050949_1	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0050949_1	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0050949_1	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0050949_1	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0050949_1	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0050949_2	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0050949_2	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0050949_2	UniRef90	UniRef90_A0A2P1CCG3	Adenine-specific methyltransferase	NA
UHGV-0050949_2	eggNOG-mapper	508419.F8J155_9CAUD	helicase activity	NA
UHGV-0050949_2	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0050949_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0050949_2	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0050949_3	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0050949_3	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0050949_3	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0050949_3	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0050949_3	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0050949_4	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-0050949_4	PHROG	phrog_9677	NA	unknown function
UHGV-0050949_4	UniRef90	UniRef90_A0A5D6WLM5	UDP-galactopyranose mutase	NA
UHGV-0050949_4	eggNOG-mapper	1410618.JNKI01000005_gene2298	UDP-galactopyranose mutase	NA
UHGV-0050949_4	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-0050949_4	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-0050949_4	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-0050949_4	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-0050949_4	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-0050949_5	PHROG	phrog_13845	NA	unknown function
UHGV-0050949_5	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0050949_5	Structural annotation	PF05119, COG3747	NA	NA
UHGV-0050949_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0050949_6	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0050949_6	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-0050949_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0050949_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0050949_6	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0050949_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-0050949_7	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-0050949_7	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0050949_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0050949_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0050949_7	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0050949_8	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0050949_8	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0050949_8	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0050949_8	eggNOG-mapper	536232.CLM_2055	Belongs to the peptidase S14 family	NA
UHGV-0050949_8	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0050949_8	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0050949_8	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0050949_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0050949_9	UniRef90	UniRef90_A0A168E1E5	Phage capsid family protein	NA
UHGV-0050949_9	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0050949_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0050949_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0050949_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0050949_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0050949_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0050949_10	UniRef90	UniRef90_A0A4S2AEU0	Phage gp6-like head-tail connector protein	NA
UHGV-0050949_10	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-0050949_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0050949_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0050949_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-0050949_11	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0050949_11	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0050949_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0050949_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0050949_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0050949_12	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0050949_12	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0050949_12	Structural annotation	TIGR01725	NA	NA
UHGV-0050949_13	PHROG	phrog_78	tail terminator	connector
UHGV-0050949_13	UniRef90	UniRef90_UPI0003697F12	NA	NA
UHGV-0050949_13	eggNOG-mapper	1399942.U3PDS3_9CAUD	NA	NA
UHGV-0050949_13	Structural annotation	PF05657	NA	NA
UHGV-0050949_14	PHROG	phrog_88	major tail protein	tail
UHGV-0050949_14	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0050949_14	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0050949_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0050949_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0050949_15	PHROG	phrog_2115	tail protein	tail
UHGV-0050949_15	eggNOG-mapper	508419.F8J169_9CAUD	NA	NA
UHGV-0050949_15	Structural annotation	PF11836	NA	NA
UHGV-0050949_16	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0050949_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0050949_16	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0050949_16	COG	COG5412	Phage-related protein	NA
UHGV-0050949_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0050949_17	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0050949_17	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0050949_17	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0050949_17	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0050949_18	PHROG	phrog_1084	NA	unknown function
UHGV-0050949_18	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-0050949_18	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0050949_19	Structural annotation	PF19079	NA	NA
UHGV-0050949_20	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0050949_20	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0050949_23	Structural annotation	NF033677	NA	NA
UHGV-0050949_24	PHROG	phrog_24267	NA	unknown function
UHGV-0050949_24	UniRef90	UniRef90_A0A4P8N308	Tail fiber	NA
UHGV-0050949_24	eggNOG-mapper	1403946.Q615_SPAC00113G0087	NA	NA
UHGV-0050949_24	COG	COG4675	Phage tail collar domain	NA
UHGV-0050949_24	Structural annotation	COG4675	NA	NA
UHGV-0050949_25	Structural annotation	PF10618	NA	NA
UHGV-0050949_26	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0050949_26	UniRef90	UniRef90_A0A075KQI0	Putative antireceptor	NA
UHGV-0050949_26	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0050949_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0050949_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0050949_26	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0050949_27	PHROG	phrog_372	tail protein	tail
UHGV-0050949_27	UniRef90	UniRef90_A0A4D6B7C6	Capsid and scaffold protein	NA
UHGV-0050949_27	eggNOG-mapper	764299.STRIC_2437	NA	NA
UHGV-0050949_27	Pfam	PF05895	NA	DUF859
UHGV-0050949_27	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0050949_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0050949_28	PHROG	phrog_95	integrase	integration and excision
UHGV-0050949_28	UniRef90	UniRef90_UPI001D085FFE	recombinase family protein	NA
UHGV-0050949_28	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-0050949_28	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0050949_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0050949_30	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0050949_30	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0050949_30	eggNOG-mapper	1122915.AUGY01000087_gene5242	transcriptional	NA
UHGV-0050949_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0050949_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0050949_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0050949_32	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0050949_32	UniRef90	UniRef90_A0A366DNY1	ERF superfamily protein	NA
UHGV-0050949_32	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0050949_32	Pfam	PF04404	ERF superfamily	ERF
UHGV-0050949_32	Structural annotation	PF04404	NA	NA
UHGV-0050949_33	Structural annotation	PF19157	NA	NA
UHGV-0050949_34	PHROG	phrog_6244	NA	unknown function
UHGV-0050949_34	eggNOG-mapper	1399942.U3PIX9_9CAUD	NA	NA
UHGV-0050949_34	Structural annotation	PF05565	NA	NA
UHGV-0050949_35	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050949_35	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-0050949_35	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0050949_35	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0050949_36	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050949_36	UniRef90	UniRef90_A0A514LEG1	HNHc domain-containing protein	NA
UHGV-0050949_36	eggNOG-mapper	1415774.U728_1689	HNH endonuclease	NA
UHGV-0050949_36	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0050949_36	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0050949_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0050949_36	Structural annotation	PF07463, PF13384, NF040595	NA	NA
UHGV-0050949_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0050949_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0050949_37	UniRef90	UniRef90_A0A3E3DZV8	Single-stranded DNA-binding protein	NA
UHGV-0050949_37	eggNOG-mapper	1235796.C815_00133	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0050949_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0050949_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0050949_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0050949_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0050949_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0050949_38	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0050949_38	eggNOG-mapper	626523.GCWU000342_01037	NA	NA
UHGV-0050949_38	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0050949_39	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0050949_39	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0050949_39	UniRef90	UniRef90_A0A2P8EI12	dUTP pyrophosphatase	NA
UHGV-0050949_39	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0050949_39	Pfam	PF00692	dUTPase	dUTPase
UHGV-0050949_39	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0050949_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0050949_39	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0050949_40	PHROG	phrog_7566	NA	unknown function
UHGV-0050949_40	UniRef90	UniRef90_A0A7X5CEC2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0050949_40	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0050949_41	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0050949_41	UniRef90	UniRef90_A0A7X9CKX4	NA	NA
UHGV-0050949_41	eggNOG-mapper	293826.Amet_2598	NA	NA
UHGV-0050949_41	Pfam	PF06356	NA	DUF1064
UHGV-0050949_41	Structural annotation	PF06356, MF_00130, NF033179	NA	NA
UHGV-0050949_42	PHROG	phrog_4973	NA	unknown function
UHGV-0050949_42	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0050949_42	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0050949_42	Structural annotation	PF14090, TIGR00373, COG5625	NA	NA
UHGV-0050949_43	PHROG	phrog_6969	NA	unknown function
UHGV-0050949_43	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0050949_43	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0050949_43	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0050949_43	Structural annotation	TIGR01714	NA	NA
UHGV-0050949_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0050949_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0050949_44	UniRef90	UniRef90_R6WX70	AAA domain-containing protein	NA
UHGV-0050949_44	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0050949_44	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0050949_44	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0050949_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0050949_44	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0050949_45	eggNOG-mapper	537011.PREVCOP_06602	NA	NA
UHGV-0050949_49	PHROG	phrog_4601	NA	unknown function
UHGV-0050949_50	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050949_50	UniRef90	UniRef90_UPI0005613AC2	RNA-guided endonuclease IscB	NA
UHGV-0050949_50	eggNOG-mapper	649747.HMPREF0083_02987	HNH nucleases	NA
UHGV-0050949_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0050949_52	Structural annotation	PF11061	NA	NA
UHGV-0050949_54	Structural annotation	TIGR01439	NA	NA
UHGV-0050949_55	PHROG	phrog_881	holin	lysis
UHGV-0050949_55	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-0050949_55	eggNOG-mapper	1437603.BMON_1122	Putative phage holin Dp-1	NA
UHGV-0050949_55	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0050949_55	Structural annotation	PF16938	NA	NA
UHGV-0050949_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0050949_57	PHROG	phrog_291	endolysin	lysis
UHGV-0050949_57	UniRef90	UniRef90_A0A430F575	Glycosyl hydrolases family 25	NA
UHGV-0050949_57	eggNOG-mapper	1688.BCUN_0265	Glycosyl hydrolases family 25	NA
UHGV-0050949_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0050949_57	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0050949_57	Pfam	PF01476	LysM domain	LysM
UHGV-0050949_57	COG	COG1388	LysM repeat	NA
UHGV-0050949_57	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0050949_58	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0050949_58	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0050949_58	UniRef90	UniRef90_A0A075KK56	HNHc domain-containing protein	NA
UHGV-0050949_58	eggNOG-mapper	1399942.U3PDW1_9CAUD	HNH endonuclease	NA
UHGV-0050949_58	Pfam	PF01844	HNH endonuclease	HNH