UHGV-0051035

Genome information

vOTU vOTU-019320

Genome length 45,284 bps

CDS count 83

Completeness 61.83% (medium-quality)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051035
vOTU ID	vOTU-019320
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_47438
BioSample	SAMEA1964687
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.45
Jumbo phage	No

Genome content
Genome length	45,284 bps
GC content	41.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	91.39%
Average CDS length	501.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051035_2	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051035_2	UniRef90	UniRef90_UPI0019565AE5	recombinase RecT	NA
UHGV-0051035_2	eggNOG-mapper	76869.PputGB1_1725	NA	NA
UHGV-0051035_2	Pfam	PF03837	RecT family	RecT
UHGV-0051035_2	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0051035_3	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051035_3	UniRef90	UniRef90_UPI0019586BB5	YqaJ viral recombinase family protein	NA
UHGV-0051035_3	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-0051035_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0051035_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0051035_6	PHROG	phrog_19572	NA	unknown function
UHGV-0051035_6	UniRef90	UniRef90_UPI001959EA92	NA	NA
UHGV-0051035_6	eggNOG-mapper	1121098.HMPREF1534_01077	NA	NA
UHGV-0051035_6	Pfam	PF14902	NA	DUF4494
UHGV-0051035_6	Structural annotation	PF14902	NA	NA
UHGV-0051035_7	PHROG	phrog_824	NA	unknown function
UHGV-0051035_7	UniRef90	UniRef90_UPI0019568853	VRR-NUC domain-containing protein	NA
UHGV-0051035_7	eggNOG-mapper	1121098.HMPREF1534_01078	VRR_NUC	NA
UHGV-0051035_7	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0051035_8	eggNOG-mapper	411901.BACCAC_01189	NA	NA
UHGV-0051035_8	Structural annotation	PF21662, NF038178	NA	NA
UHGV-0051035_9	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051035_9	UniRef90	UniRef90_UPI001F2114AB	HNH endonuclease	NA
UHGV-0051035_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0051035_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0051035_10	PHROG	phrog_16167	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0051035_10	eggNOG-mapper	762968.HMPREF9441_00534	NA	NA
UHGV-0051035_10	Structural annotation	PF10771, NF000244	NA	NA
UHGV-0051035_11	UniRef90	UniRef90_F3PDU6	Conserved domain protein	NA
UHGV-0051035_11	eggNOG-mapper	1268240.ATFI01000008_gene2559	NA	NA
UHGV-0051035_11	Structural annotation	PF20338	NA	NA
UHGV-0051035_13	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0051035_13	UniRef90	UniRef90_UPI001B8CF775	radical SAM protein	NA
UHGV-0051035_13	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-0051035_13	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0051035_13	Structural annotation	MF_01864, TIGR00089, COG0621	NA	NA
UHGV-0051035_17	Structural annotation	PF16546	NA	NA
UHGV-0051035_18	PHROG	phrog_32914	NA	unknown function
UHGV-0051035_19	PHROG	phrog_98	NA	unknown function
UHGV-0051035_19	UniRef90	UniRef90_A0A3E4WHJ6	YopX domain-containing protein	NA
UHGV-0051035_19	eggNOG-mapper	411477.PARMER_02066	YopX protein	NA
UHGV-0051035_19	Pfam	PF09643	YopX protein	YopX
UHGV-0051035_19	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0051035_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0051035_23	PHROG	phrog_874	NA	unknown function
UHGV-0051035_23	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0051035_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0051035_30	UniRef90	UniRef90_UPI000C0400E6	NA	NA
UHGV-0051035_31	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0051035_31	UniRef90	UniRef90_R6ZP41	Conserved domain protein	NA
UHGV-0051035_31	eggNOG-mapper	1122971.BAME01000163_gene6622	NA	NA
UHGV-0051035_31	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0051035_32	KOfam	K03630	radC; DNA repair protein RadC	NA
UHGV-0051035_32	PHROG	phrog_10276	DNA repair protein	DNA, RNA and nucleotide metabolism
UHGV-0051035_32	UniRef90	UniRef90_UPI00195E8848	JAB domain-containing protein	NA
UHGV-0051035_32	eggNOG-mapper	1121889.AUDM01000004_gene2523	DNA repair protein	NA
UHGV-0051035_32	Pfam	PF04002	RadC-like JAB domain	RadC
UHGV-0051035_32	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0051035_32	Structural annotation	PF04002, MF_00018, TIGR00608, COG2003	NA	NA
UHGV-0051035_33	eggNOG-mapper	411464.DESPIG_00774	NA	NA
UHGV-0051035_34	PHROG	phrog_421	NA	unknown function
UHGV-0051035_34	UniRef90	UniRef90_A0A3L7Z4N0	NA	NA
UHGV-0051035_34	eggNOG-mapper	457424.BFAG_02804	NA	NA
UHGV-0051035_36	Structural annotation	PF13066, COG4014	NA	NA
UHGV-0051035_37	PHROG	phrog_8684	NA	unknown function
UHGV-0051035_37	UniRef90	UniRef90_A0A414XIW0	YopX domain-containing protein	NA
UHGV-0051035_37	eggNOG-mapper	742727.HMPREF9447_04806	YopX protein	NA
UHGV-0051035_37	Pfam	PF09643	YopX protein	YopX
UHGV-0051035_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0051035_38	AcrCatalog	cluster_25385	NA	NA
UHGV-0051035_39	UniRef90	UniRef90_UPI001922BCB8	DpnD/PcfM family protein	NA
UHGV-0051035_39	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0051035_39	Structural annotation	PF14207	NA	NA
UHGV-0051035_40	PHROG	phrog_1229	NA	unknown function
UHGV-0051035_40	eggNOG-mapper	585502.HMPREF0645_2619	NA	NA
UHGV-0051035_41	PHROG	phrog_22392	NA	unknown function
UHGV-0051035_41	UniRef90	UniRef90_A0A174S6P5	Demethylase	NA
UHGV-0051035_41	eggNOG-mapper	1121098.HMPREF1534_01085	NA	NA
UHGV-0051035_42	PHROG	phrog_18237	NA	unknown function
UHGV-0051035_45	UniRef90	UniRef90_UPI001958D85C	HU family DNA-binding protein	NA
UHGV-0051035_45	eggNOG-mapper	742727.HMPREF9447_01714	Bacterial DNA-binding protein	NA
UHGV-0051035_45	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-0051035_45	NCBIFam	TIGR01201.1	HU family DNA-binding protein	NA
UHGV-0051035_45	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0051035_45	Structural annotation	PF18291, MF_00380, TIGR01201, COG0776	NA	NA
UHGV-0051035_46	PHROG	phrog_29450	NA	unknown function
UHGV-0051035_46	eggNOG-mapper	591023.AM202_03095	NA	NA
UHGV-0051035_46	PADLOC	Aga_Helical-REase	Class II	Argonaute
UHGV-0051035_46	Pfam	PF18742	REase_DpnII-MboI	DpnII-MboI
UHGV-0051035_47	UniRef90	UniRef90_UPI00037864AA	tetratricopeptide repeat protein	NA
UHGV-0051035_47	eggNOG-mapper	679190.HMPREF0650_0362	ftsk spoiiie	NA
UHGV-0051035_47	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0051035_47	Structural annotation	PF13512, MF_00439, NF040959, COG0457	NA	NA
UHGV-0051035_48	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0051035_48	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051035_48	UniRef90	UniRef90_UPI00195AAD9C	type I restriction endonuclease	NA
UHGV-0051035_48	eggNOG-mapper	762984.HMPREF9445_00134	Type I restriction enzyme HsdR protein	NA
UHGV-0051035_48	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0051035_48	COG	COG4748	NA	NA
UHGV-0051035_48	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0051035_49	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0051035_49	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0051035_49	UniRef90	UniRef90_R7JQ35	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0051035_49	eggNOG-mapper	471870.BACINT_02939	Helix-turn-helix	NA
UHGV-0051035_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051035_49	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0051035_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0051035_50	PHROG	phrog_2523	NA	unknown function
UHGV-0051035_50	UniRef90	UniRef90_A0A1Y4AMZ4	Addiction module toxin RelE	NA
UHGV-0051035_50	eggNOG-mapper	471870.BACINT_02938	NA	NA
UHGV-0051035_50	Pfam	PF05973	NA	Gp49
UHGV-0051035_50	COG	COG4679	Phage-related protein	NA
UHGV-0051035_50	Structural annotation	PF05973, TIGR02385, COG4679	NA	NA
UHGV-0051035_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0051035_51	UniRef90	UniRef90_UPI00189CAD1B	helix-turn-helix transcriptional regulator	NA
UHGV-0051035_51	eggNOG-mapper	1268240.ATFI01000008_gene2570	Helix-turn-helix XRE-family like proteins	NA
UHGV-0051035_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0051035_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0051035_52	eggNOG-mapper	1268240.ATFI01000020_gene151	NA	NA
UHGV-0051035_52	Structural annotation	NF033948	NA	NA
UHGV-0051035_53	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0051035_53	UniRef90	UniRef90_UPI00195A6FD7	phage antirepressor KilAC domain-containing protein	NA
UHGV-0051035_53	eggNOG-mapper	1123008.KB905702_gene2344	Phage antirepressor protein KilAC domain	NA
UHGV-0051035_53	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0051035_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0051035_53	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0051035_53	Structural annotation	PF03374, PF04383, COG3645, COG3943	NA	NA
UHGV-0051035_54	UniRef90	UniRef90_A0A015T4B9	Putative membrane protein	NA
UHGV-0051035_58	UniRef90	UniRef90_UPI00195E66C1	NA	NA
UHGV-0051035_58	eggNOG-mapper	1235803.C825_04126	NA	NA
UHGV-0051035_58	Pfam	PF14053	NA	DUF4248
UHGV-0051035_59	UniRef90	UniRef90_UPI00195CFF8E	phBC6A51 family helix-turn-helix protein	NA
UHGV-0051035_59	eggNOG-mapper	1358423.N180_02820	NA	NA
UHGV-0051035_59	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0051035_60	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0051035_60	UniRef90	UniRef90_UPI001899B00C	terminase family protein	NA
UHGV-0051035_60	eggNOG-mapper	619693.HMPREF6745_2517	domain protein	NA
UHGV-0051035_60	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0051035_60	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0051035_60	COG	COG5362	Phage terminase large subunit	NA
UHGV-0051035_60	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0051035_62	PHROG	phrog_1758	acetyltransferase	other
UHGV-0051035_62	UniRef90	UniRef90_UPI0019588C9F	GNAT family N-acetyltransferase	NA
UHGV-0051035_62	eggNOG-mapper	470145.BACCOP_00109	NA	NA
UHGV-0051035_62	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-0051035_62	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0051035_62	Structural annotation	PF12568, MF_02018, NF010241, COG3153	NA	NA
UHGV-0051035_64	PHROG	phrog_64	portal protein	head and packaging
UHGV-0051035_64	UniRef90	UniRef90_UPI00195ACD32	phage portal protein	NA
UHGV-0051035_64	eggNOG-mapper	411901.BACCAC_01152	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0051035_64	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0051035_64	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0051035_65	PHROG	phrog_34745	NA	unknown function
UHGV-0051035_65	eggNOG-mapper	1235788.C802_00073	NA	NA
UHGV-0051035_66	PHROG	phrog_7625	head morphogenesis	head and packaging
UHGV-0051035_66	UniRef90	UniRef90_A5ZE37	Conserved domain protein	NA
UHGV-0051035_66	eggNOG-mapper	411901.BACCAC_01148	NA	NA
UHGV-0051035_67	PHROG	phrog_7625	head morphogenesis	head and packaging
UHGV-0051035_67	UniRef90	UniRef90_UPI00106AD131	T6SS effector (p)ppApp synthetase Tas1	NA
UHGV-0051035_67	eggNOG-mapper	411901.BACCAC_01148	NA	NA
UHGV-0051035_69	KOfam	K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	NA
UHGV-0051035_69	PHROG	phrog_990	metal-dependent phosphohydrolase	other
UHGV-0051035_69	UniRef90	UniRef90_UPI00195731AB	HD domain-containing protein	NA
UHGV-0051035_69	eggNOG-mapper	411901.BACCAC_01146	HD domain	NA
UHGV-0051035_69	Pfam	PF13328	HD domain	HD_4
UHGV-0051035_69	COG	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily	NA
UHGV-0051035_69	Structural annotation	PF13328	NA	NA
UHGV-0051035_70	PHROG	phrog_5824	NA	unknown function
UHGV-0051035_70	eggNOG-mapper	457424.BFAG_02423	NA	NA
UHGV-0051035_71	PHROG	phrog_38330	NA	unknown function
UHGV-0051035_71	eggNOG-mapper	411901.BACCAC_01144	NA	NA
UHGV-0051035_71	Structural annotation	PF02924	NA	NA
UHGV-0051035_72	PHROG	phrog_29	major head protein	head and packaging
UHGV-0051035_72	UniRef90	UniRef90_UPI00195D2F30	major capsid protein	NA
UHGV-0051035_72	eggNOG-mapper	411901.BACCAC_01143	Phage major capsid protein E	NA
UHGV-0051035_72	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0051035_72	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0051035_73	eggNOG-mapper	411901.BACCAC_01142	NA	NA
UHGV-0051035_73	Pfam	PF20449	NA	DUF6706
UHGV-0051035_73	Structural annotation	PF20449	NA	NA
UHGV-0051035_74	PHROG	phrog_13251	NA	unknown function
UHGV-0051035_74	eggNOG-mapper	411901.BACCAC_01141	NA	NA
UHGV-0051035_74	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0051035_75	PHROG	phrog_5377	NA	unknown function
UHGV-0051035_75	UniRef90	UniRef90_UPI001897E37F	HK97 gp10 family phage protein	NA
UHGV-0051035_75	eggNOG-mapper	679189.HMPREF9019_0962	NA	NA
UHGV-0051035_76	PHROG	phrog_5597	NA	unknown function
UHGV-0051035_76	eggNOG-mapper	886379.AEWI01000001_gene1733	NA	NA
UHGV-0051035_76	Structural annotation	PF05657	NA	NA
UHGV-0051035_77	PHROG	phrog_17745	NA	unknown function
UHGV-0051035_77	UniRef90	UniRef90_UPI000E49EB53	BACON domain-containing protein	NA
UHGV-0051035_77	eggNOG-mapper	226186.BT_4434	NA	NA
UHGV-0051035_77	Structural annotation	PF06199, TIGR01603, COG5437	NA	NA
UHGV-0051035_78	PHROG	phrog_11996	NA	unknown function
UHGV-0051035_78	eggNOG-mapper	411901.BACCAC_01137	NA	NA
UHGV-0051035_78	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0051035_79	Structural annotation	PF10794, NF041245, COG5480	NA	NA
UHGV-0051035_80	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0051035_80	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051035_80	UniRef90	UniRef90_UPI001959D940	type I restriction enzyme HsdR N-terminal domain-containing protein	NA
UHGV-0051035_80	eggNOG-mapper	411901.BACCAC_01135	Type I restriction enzyme HsdR protein	NA
UHGV-0051035_80	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0051035_80	COG	COG4748	NA	NA
UHGV-0051035_80	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0051035_81	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0051035_81	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0051035_81	UniRef90	UniRef90_UPI001896B32B	tape measure protein	NA
UHGV-0051035_81	eggNOG-mapper	411477.PARMER_02028	NA	NA
UHGV-0051035_81	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0051035_81	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0051035_81	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0051035_81	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0051035_82	PHROG	phrog_10156	NA	unknown function
UHGV-0051035_82	eggNOG-mapper	1347393.HG726021_gene471	NA	NA
UHGV-0051035_83	PHROG	phrog_6305	tail protein	tail
UHGV-0051035_83	eggNOG-mapper	411901.BACCAC_01133	NA	NA