UHGV-0051161

Genome information

Genome length 41,804 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9623

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051161
vOTU ID	vOTU-070284
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_31073
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9623
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.34
Jumbo phage	No

Genome content
Genome length	41,804 bps
GC content	50.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	95.13%
Average CDS length	623.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051161_1	eggNOG-mapper	1127692.HMPREF9075_01190	NA	NA
UHGV-0051161_1	Structural annotation	PF14124	NA	NA
UHGV-0051161_2	PHROG	phrog_21664	NA	unknown function
UHGV-0051161_2	UniRef90	UniRef90_UPI000E0365A1	protein-export chaperone SecB	NA
UHGV-0051161_2	eggNOG-mapper	1538644.KO02_21690	Preprotein translocase subunit SecB	NA
UHGV-0051161_2	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0051161_2	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-0051161_2	Structural annotation	PF02556, MF_00821, NF004394, COG1952	NA	NA
UHGV-0051161_4	PHROG	phrog_26448	NA	unknown function
UHGV-0051161_4	eggNOG-mapper	742725.HMPREF9450_02132	NA	NA
UHGV-0051161_4	Pfam	PF20647	NA	DUF6808
UHGV-0051161_4	Structural annotation	PF20647	NA	NA
UHGV-0051161_6	PHROG	phrog_32423	NA	unknown function
UHGV-0051161_6	UniRef90	UniRef90_UPI0011DCF0C5	cell division protein ZapB	NA
UHGV-0051161_6	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-0051161_7	UniRef90	UniRef90_D7IT91	Glycosyltransferase	NA
UHGV-0051161_7	eggNOG-mapper	762984.HMPREF9445_00187	NA	NA
UHGV-0051161_7	Structural annotation	COG3371	NA	NA
UHGV-0051161_8	PHROG	phrog_38707	NA	unknown function
UHGV-0051161_8	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-0051161_9	PHROG	phrog_24616	NA	unknown function
UHGV-0051161_9	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0051161_9	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0051161_9	Structural annotation	PF20459	NA	NA
UHGV-0051161_10	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0051161_10	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-0051161_10	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0051161_11	PHROG	phrog_37138	NA	unknown function
UHGV-0051161_11	eggNOG-mapper	1347393.HG726026_gene2528	NA	NA
UHGV-0051161_12	PHROG	phrog_21217	NA	unknown function
UHGV-0051161_12	eggNOG-mapper	357276.EL88_08365	NA	NA
UHGV-0051161_13	PHROG	phrog_38780	NA	unknown function
UHGV-0051161_13	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0051161_13	eggNOG-mapper	742767.HMPREF9456_03365	NA	NA
UHGV-0051161_13	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0051161_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0051161_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0051161_14	UniRef90	UniRef90_A0A373ZMP4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0051161_14	eggNOG-mapper	1122931.AUAE01000005_gene3257	Clp protease	NA
UHGV-0051161_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0051161_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0051161_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0051161_15	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0051161_15	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0051161_15	UniRef90	UniRef90_UPI00050A2096	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0051161_15	eggNOG-mapper	1121887.AUDK01000033_gene1450	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0051161_15	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0051161_15	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0051161_16	UniRef90	UniRef90_UPI00050A273C	helix-turn-helix transcriptional regulator	NA
UHGV-0051161_16	eggNOG-mapper	1121887.AUDK01000033_gene1451	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0051161_16	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0051161_16	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0051161_17	PHROG	phrog_17790	NA	unknown function
UHGV-0051161_17	UniRef90	UniRef90_A0A7W7AUU3	Aminopeptidase N	NA
UHGV-0051161_17	eggNOG-mapper	1122981.AUME01000026_gene523	NA	NA
UHGV-0051161_18	PHROG	phrog_37298	NA	unknown function
UHGV-0051161_18	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0051161_18	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0051161_18	COG	COG1511	NA	NA
UHGV-0051161_19	PHROG	phrog_33698	NA	unknown function
UHGV-0051161_19	eggNOG-mapper	1236514.BAKL01000015_gene1630	NA	NA
UHGV-0051161_19	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0051161_20	PHROG	phrog_37065	NA	unknown function
UHGV-0051161_20	eggNOG-mapper	357276.EL88_08395	NA	NA
UHGV-0051161_20	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0051161_21	eggNOG-mapper	357276.EL88_08400	NA	NA
UHGV-0051161_22	PHROG	phrog_33245	NA	unknown function
UHGV-0051161_22	eggNOG-mapper	1122931.AUAE01000005_gene3264	NA	NA
UHGV-0051161_22	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0051161_23	PHROG	phrog_28240	NA	unknown function
UHGV-0051161_23	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0051161_23	eggNOG-mapper	1236514.BAKL01000015_gene1634	NA	NA
UHGV-0051161_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0051161_24	UniRef90	UniRef90_A0A8J7UHC8	Phage terminase large subunit	NA
UHGV-0051161_24	eggNOG-mapper	742725.HMPREF9450_00100	domain protein	NA
UHGV-0051161_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0051161_24	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0051161_24	COG	COG5410	NA	NA
UHGV-0051161_24	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0051161_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0051161_25	UniRef90	UniRef90_R6S335	Beta-galactoside alpha-2 3-sialyltransferase	NA
UHGV-0051161_25	eggNOG-mapper	1121101.HMPREF1532_02596	Helix-turn-helix of insertion element transposase	NA
UHGV-0051161_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0051161_25	Structural annotation	PF07141	NA	NA
UHGV-0051161_26	eggNOG-mapper	1235803.C825_05321	NA	NA
UHGV-0051161_26	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0051161_27	PHROG	phrog_824	NA	unknown function
UHGV-0051161_27	UniRef90	UniRef90_A0A1Y3WEY5	Nuclease	NA
UHGV-0051161_27	eggNOG-mapper	1122931.AUAE01000005_gene3274	VRR_NUC	NA
UHGV-0051161_27	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0051161_27	Structural annotation	PF08774	NA	NA
UHGV-0051161_28	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-0051161_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0051161_28	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0051161_29	PHROG	phrog_874	NA	unknown function
UHGV-0051161_29	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0051161_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0051161_30	PHROG	phrog_8684	NA	unknown function
UHGV-0051161_30	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-0051161_30	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0051161_30	Pfam	PF09643	YopX protein	YopX
UHGV-0051161_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0051161_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0051161_33	PHROG	phrog_10841	NA	unknown function
UHGV-0051161_36	KOfam	K19170	dndC; DNA sulfur modification protein DndC	NA
UHGV-0051161_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0051161_36	UniRef90	UniRef90_A0A143XNZ9	PAPS_reduct domain-containing protein	NA
UHGV-0051161_36	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0051161_36	PADLOC	SspD_00001	SspD	SSP
UHGV-0051161_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0051161_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0051161_36	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0051161_37	UniRef90	UniRef90_A0A645DB76	Fib_succ_major domain-containing protein	NA
UHGV-0051161_37	eggNOG-mapper	1211813.CAPH01000002_gene1135	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0051161_37	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0051161_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0051161_40	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0051161_40	UniRef90	UniRef90_UPI001595AE58	ATP-binding protein	NA
UHGV-0051161_40	eggNOG-mapper	1235788.C802_04559	DNA-dependent DNA replication	NA
UHGV-0051161_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0051161_40	Structural annotation	PF01695, MF_03025, NF005992, COG1484	NA	NA
UHGV-0051161_41	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0051161_41	UniRef90	UniRef90_A0A4P8I8N3	DnaD domain protein	NA
UHGV-0051161_41	eggNOG-mapper	742767.HMPREF9456_03267	NA	NA
UHGV-0051161_41	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0051161_42	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0051161_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0051161_42	UniRef90	UniRef90_D1K9K1	Helicase C-terminal domain protein	NA
UHGV-0051161_42	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-0051161_42	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0051161_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0051161_42	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0051161_42	Structural annotation	PF18766, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0051161_43	PHROG	phrog_26490	NA	unknown function
UHGV-0051161_43	eggNOG-mapper	411476.BACOVA_03887	NA	NA
UHGV-0051161_44	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0051161_44	UniRef90	UniRef90_UPI0008D9D600	recombination protein NinB	NA
UHGV-0051161_44	eggNOG-mapper	357276.EL88_08500	NA	NA
UHGV-0051161_44	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0051161_46	PHROG	phrog_35319	NA	unknown function
UHGV-0051161_46	UniRef90	UniRef90_UPI000D0F1C31	HNH endonuclease	NA
UHGV-0051161_46	eggNOG-mapper	762984.HMPREF9445_00148	NA	NA
UHGV-0051161_46	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-0051161_47	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051161_47	UniRef90	UniRef90_UPI000D103AB5	ATP-binding protein	NA
UHGV-0051161_47	eggNOG-mapper	1122931.AUAE01000005_gene3279	AAA domain	NA
UHGV-0051161_47	Pfam	PF13479	AAA domain	AAA_24
UHGV-0051161_47	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0051161_47	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0051161_48	UniRef90	UniRef90_A0A645DB76	Fib_succ_major domain-containing protein	NA
UHGV-0051161_48	eggNOG-mapper	1211813.CAPH01000002_gene1135	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0051161_48	Pfam	PF07603	NA	DUF1566
UHGV-0051161_48	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0051161_48	Structural annotation	PF09603, TIGR02145	NA	NA
UHGV-0051161_54	UniRef90	UniRef90_A0A1Y4C7I0	HTH luxR-type domain-containing protein	NA
UHGV-0051161_54	eggNOG-mapper	272559.BF9343_2244	helix_turn_helix, Lux Regulon	NA
UHGV-0051161_54	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-0051161_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0051161_56	UniRef90	UniRef90_UPI0018997A55	helix-turn-helix transcriptional regulator	NA
UHGV-0051161_56	eggNOG-mapper	679189.HMPREF9019_0906	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0051161_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0051161_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0051161_56	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0051161_57	eggNOG-mapper	585502.HMPREF0645_0768	ORF6N domain	NA
UHGV-0051161_57	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0051161_62	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0051161_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0051161_62	UniRef90	UniRef90_A0A354M3S1	Tyr recombinase domain-containing protein	NA
UHGV-0051161_62	eggNOG-mapper	908612.HMPREF9720_2094	Belongs to the 'phage' integrase family	NA
UHGV-0051161_62	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0051161_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051161_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0051161_62	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0051161_64	UniRef90	UniRef90_A0A661X0A3	Glycosyl hydrolase family 32	NA
UHGV-0051161_64	eggNOG-mapper	1206744.BAGL01000032_gene63	Glycosyl hydrolases family 32 N-terminal domain	NA
UHGV-0051161_64	COG	COG1621	Sucrose-6-phosphate hydrolase SacC, GH32 family	NA