UHGV-0051236

Genome information

Genome length 26,323 bps

CDS count 38

Completeness 63.79% (medium-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051236
vOTU ID	vOTU-034801
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_64777
BioSample	SAMEA2338753
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.92
Jumbo phage	No

Genome content
Genome length	26,323 bps
GC content	51.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	89.58%
Average CDS length	623.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051236_3	PHROG	phrog_27545	NA	unknown function
UHGV-0051236_3	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-0051236_3	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0051236_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0051236_3	Structural annotation	PF14600	NA	NA
UHGV-0051236_4	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-0051236_7	PHROG	phrog_21483	NA	unknown function
UHGV-0051236_7	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0051236_8	UniRef90	UniRef90_A0A318L9Z0	MuF_C domain-containing protein	NA
UHGV-0051236_8	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0051236_10	PHROG	phrog_6721	NA	unknown function
UHGV-0051236_10	eggNOG-mapper	665950.HMPREF1025_01974	NA	NA
UHGV-0051236_10	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0051236_11	PHROG	phrog_474	phosphofructokinase	other
UHGV-0051236_11	UniRef90	UniRef90_A0A7X6GRJ7	NA	NA
UHGV-0051236_11	eggNOG-mapper	1123247.AUIJ01000002_gene2234	NA	NA
UHGV-0051236_11	Pfam	PF19905	NA	DUF6378
UHGV-0051236_11	Structural annotation	PF19905, PF14354, NF007260	NA	NA
UHGV-0051236_13	PHROG	phrog_5051	NA	unknown function
UHGV-0051236_13	eggNOG-mapper	349123.Lreu23DRAFT_3108	NA	NA
UHGV-0051236_15	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0051236_15	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0051236_15	UniRef90	UniRef90_A0A3L7S6W5	dCTP deaminase, dUMP-forming	NA
UHGV-0051236_15	eggNOG-mapper	546269.HMPREF0389_00105	Belongs to the dCTP deaminase family	NA
UHGV-0051236_15	Pfam	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
UHGV-0051236_15	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0051236_15	COG	COG0717	dCTP deaminase	NA
UHGV-0051236_15	HAMAP	MF_00146	dCTP deaminase, dUMP-forming [dcd]	NA
UHGV-0051236_15	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0051236_16	UniRef90	UniRef90_A0A352NBH9	NA	NA
UHGV-0051236_16	eggNOG-mapper	1235800.C819_00506	NA	NA
UHGV-0051236_16	Pfam	PF19789	NA	DUF6273
UHGV-0051236_16	Structural annotation	PF19789	NA	NA
UHGV-0051236_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0051236_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0051236_17	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0051236_17	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0051236_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0051236_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0051236_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0051236_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0051236_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0051236_18	UniRef90	UniRef90_A0A845R4R0	DNA helicase	NA
UHGV-0051236_18	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0051236_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0051236_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0051236_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0051236_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0051236_19	PHROG	phrog_15768	NA	unknown function
UHGV-0051236_19	UniRef90	UniRef90_UPI0002D17810	helix-turn-helix domain-containing protein	NA
UHGV-0051236_19	eggNOG-mapper	658086.HMPREF0994_02124	NA	NA
UHGV-0051236_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0051236_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0051236_19	Structural annotation	PF04492, MF_01819, NF040939, COG3355	NA	NA
UHGV-0051236_21	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0051236_21	Structural annotation	PF05037	NA	NA
UHGV-0051236_23	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051236_23	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0051236_23	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0051236_23	Pfam	PF13479	AAA domain	AAA_24
UHGV-0051236_23	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0051236_26	Structural annotation	PF19157	NA	NA
UHGV-0051236_29	PHROG	phrog_14556	NA	unknown function
UHGV-0051236_29	eggNOG-mapper	203119.Cthe_2752	Metallo-beta-lactamase domain protein	NA
UHGV-0051236_29	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0051236_30	UniRef90	UniRef90_UPI000B8B6894	helix-turn-helix domain-containing protein	NA
UHGV-0051236_30	eggNOG-mapper	697303.Thewi_2447	Helix-turn-helix XRE-family like proteins	NA
UHGV-0051236_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051236_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0051236_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0051236_31	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0051236_31	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0051236_31	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0051236_31	eggNOG-mapper	1203602.HMPREF1527_01116	Peptidase S24-like	NA
UHGV-0051236_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051236_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0051236_31	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0051236_32	KOfam	K14059	int; integrase	NA
UHGV-0051236_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0051236_32	UniRef90	UniRef90_UPI00082B31A6	tyrosine-type recombinase/integrase	NA
UHGV-0051236_32	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0051236_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051236_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0051236_32	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0051236_37	Structural annotation	PF10723	NA	NA
UHGV-0051236_38	Structural annotation	PF16677	NA	NA