UHGV-0051292

Genome information

Genome length 36,746 bps

CDS count 59

Completeness 81.17% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051292
vOTU ID	vOTU-039720
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_56958
BioSample	SAMEA2143633
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.2
Jumbo phage	No

Genome content
Genome length	36,746 bps
GC content	27.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.80%
Average CDS length	588.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051292_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0051292_2	PHROG	phrog_3088	amidase	lysis
UHGV-0051292_2	UniRef90	UniRef90_R7FK28	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0051292_2	eggNOG-mapper	457396.CSBG_00241	Ami_2	NA
UHGV-0051292_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0051292_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0051292_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0051292_2	Structural annotation	PF01510, PF08230, NF008758, COG5632	NA	NA
UHGV-0051292_4	PHROG	phrog_1299	holin	lysis
UHGV-0051292_4	Structural annotation	PF06946	NA	NA
UHGV-0051292_5	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0051292_5	Structural annotation	PF01590, MF_04104, NF041673, COG2203	NA	NA
UHGV-0051292_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0051292_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0051292_7	UniRef90	UniRef90_A0A7X0LXI1	Reverse transcriptase domain-containing protein	NA
UHGV-0051292_7	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0051292_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0051292_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0051292_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0051292_8	PHROG	phrog_5302	tail protein	tail
UHGV-0051292_8	UniRef90	UniRef90_A0A845LFH6	BppU family phage baseplate upper protein	NA
UHGV-0051292_8	eggNOG-mapper	1507.HMPREF0262_00245	NA	NA
UHGV-0051292_8	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0051292_8	Structural annotation	PF12571, COG1262	NA	NA
UHGV-0051292_9	PHROG	phrog_521	tail protein	tail
UHGV-0051292_9	UniRef90	UniRef90_A0A0A7RVP9	XkdU-like tail protein	NA
UHGV-0051292_9	eggNOG-mapper	1033737.CAEV01000007_gene2579	NA	NA
UHGV-0051292_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0051292_9	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0051292_9	Structural annotation	PF10076, PF12571, TIGR02242, COG3778	NA	NA
UHGV-0051292_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0051292_10	UniRef90	UniRef90_A0A354MD66	Phage tail protein	NA
UHGV-0051292_10	eggNOG-mapper	642492.Clole_2741	baseplate J-like protein	NA
UHGV-0051292_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0051292_10	COG	COG3299	NA	NA
UHGV-0051292_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0051292_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0051292_11	UniRef90	UniRef90_A0A354MD67	NA	NA
UHGV-0051292_11	eggNOG-mapper	1582156.A0A0A8WFW6_9CAUD	lytic transglycosylase activity	NA
UHGV-0051292_11	Pfam	PF10934	NA	DUF2634
UHGV-0051292_11	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0051292_12	PHROG	phrog_579	NA	unknown function
UHGV-0051292_12	UniRef90	UniRef90_UPI0018AA7FDA	NA	NA
UHGV-0051292_12	eggNOG-mapper	1235790.C805_00605	NA	NA
UHGV-0051292_12	Pfam	PF10844	NA	DUF2577
UHGV-0051292_12	Structural annotation	PF10844	NA	NA
UHGV-0051292_13	PHROG	phrog_400	tail protein	tail
UHGV-0051292_13	UniRef90	UniRef90_A0A3S8S1Z4	Hydrolase	NA
UHGV-0051292_13	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0051292_13	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0051292_13	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0051292_14	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0051292_14	PHROG	phrog_380	endolysin	lysis
UHGV-0051292_14	UniRef90	UniRef90_A0A354MD71	Peptidoglycan-binding protein LysM	NA
UHGV-0051292_14	eggNOG-mapper	397288.C806_00122	Lysin motif	NA
UHGV-0051292_14	Pfam	PF01476	LysM domain	LysM
UHGV-0051292_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0051292_14	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0051292_15	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0051292_15	UniRef90	UniRef90_A0A354MD72	TMP_3 domain-containing protein	NA
UHGV-0051292_15	eggNOG-mapper	1029718.SFBM_0131	tape measure	NA
UHGV-0051292_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0051292_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0051292_15	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0051292_15	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0051292_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0051292_16	UniRef90	UniRef90_A0A354MD73	Phage portal protein	NA
UHGV-0051292_16	eggNOG-mapper	642492.Clole_2748	PFAM Phage XkdN-like protein	NA
UHGV-0051292_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0051292_16	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0051292_17	PHROG	phrog_365	tail protein	tail
UHGV-0051292_17	UniRef90	UniRef90_A0A7C6BF98	Phage tail tube protein	NA
UHGV-0051292_17	eggNOG-mapper	642492.Clole_2749	Phage tail tube protein	NA
UHGV-0051292_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0051292_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0051292_18	PHROG	phrog_279	tail sheath	tail
UHGV-0051292_18	UniRef90	UniRef90_A0A354MD75	Phage tail protein	NA
UHGV-0051292_18	eggNOG-mapper	696281.Desru_1315	PFAM Phage tail sheath protein	NA
UHGV-0051292_18	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0051292_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0051292_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0051292_18	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0051292_19	PHROG	phrog_966	NA	unknown function
UHGV-0051292_19	UniRef90	UniRef90_T3DFM8	Putative phage protein	NA
UHGV-0051292_19	eggNOG-mapper	642492.Clole_2751	NA	NA
UHGV-0051292_20	PHROG	phrog_525	NA	unknown function
UHGV-0051292_20	UniRef90	UniRef90_T3DEM0	Putative phage protein	NA
UHGV-0051292_20	eggNOG-mapper	1151292.QEW_1340	NA	NA
UHGV-0051292_20	Pfam	PF20765	NA	DUF6838
UHGV-0051292_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0051292_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0051292_21	UniRef90	UniRef90_UPI0003672CDC	HK97 gp10 family phage protein	NA
UHGV-0051292_21	eggNOG-mapper	1123511.KB905868_gene178	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0051292_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0051292_21	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0051292_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0051292_22	UniRef90	UniRef90_F2JK38	NA	NA
UHGV-0051292_22	eggNOG-mapper	642492.Clole_2754	NA	NA
UHGV-0051292_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0051292_24	UniRef90	UniRef90_R7FAI5	Rho_N domain-containing protein	NA
UHGV-0051292_25	PHROG	phrog_29	major head protein	head and packaging
UHGV-0051292_25	UniRef90	UniRef90_A0A354MD83	Major capsid protein E	NA
UHGV-0051292_25	eggNOG-mapper	1296662.S5MP36_9CAUD	Phage major capsid protein E	NA
UHGV-0051292_25	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0051292_25	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0051292_26	PHROG	phrog_909	major head protein	head and packaging
UHGV-0051292_26	UniRef90	UniRef90_R7FKI7	NA	NA
UHGV-0051292_26	eggNOG-mapper	1121121.KB894312_gene3158	NA	NA
UHGV-0051292_26	Structural annotation	PF02924	NA	NA
UHGV-0051292_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0051292_27	UniRef90	UniRef90_R7F9F3	Phage minor structural protein GP20	NA
UHGV-0051292_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0051292_27	Structural annotation	PF06810	NA	NA
UHGV-0051292_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0051292_29	UniRef90	UniRef90_A0A354MD86	Phage head morphogenesis protein	NA
UHGV-0051292_29	eggNOG-mapper	1121289.JHVL01000082_gene1211	Phage Mu protein F like protein	NA
UHGV-0051292_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0051292_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0051292_29	COG	COG2369	NA	NA
UHGV-0051292_29	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0051292_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0051292_30	UniRef90	UniRef90_A0A354MD87	Phage portal protein	NA
UHGV-0051292_30	eggNOG-mapper	445335.CBN_1374	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0051292_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0051292_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0051292_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0051292_31	PHROG	phrog_10250	NA	unknown function
UHGV-0051292_31	UniRef90	UniRef90_A0A1Q6SR41	Terminase	NA
UHGV-0051292_31	eggNOG-mapper	756499.Desde_1076	TIGRFAM Phage terminase, large subunit, PBSX	NA
UHGV-0051292_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0051292_31	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0051292_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0051292_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0051292_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0051292_32	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0051292_32	UniRef90	UniRef90_A0A3D1FT26	Terminase	NA
UHGV-0051292_32	eggNOG-mapper	1300150.EMQU_2270	Phage terminase small subunit	NA
UHGV-0051292_32	COG	COG5484	NA	NA
UHGV-0051292_32	Structural annotation	PF06056, NF040785, COG5484	NA	NA
UHGV-0051292_33	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0051292_33	PHROG	phrog_4899	NA	unknown function
UHGV-0051292_33	UniRef90	UniRef90_UPI0004861CB4	queuosine precursor transporter	NA
UHGV-0051292_33	eggNOG-mapper	1408438.JADD01000034_gene465	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0051292_33	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0051292_33	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0051292_33	COG	COG1738	NA	NA
UHGV-0051292_33	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0051292_34	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0051292_34	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0051292_34	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-0051292_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0051292_35	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0051292_35	UniRef90	UniRef90_A0A354MD90	Transcriptional regulator	NA
UHGV-0051292_35	eggNOG-mapper	398512.JQKC01000005_gene5433	NA	NA
UHGV-0051292_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0051292_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0051292_35	COG	COG0863	DNA modification methylase	NA
UHGV-0051292_35	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0051292_36	PHROG	phrog_1558	NA	unknown function
UHGV-0051292_36	UniRef90	UniRef90_UPI00177FE924	HTH domain-containing protein	NA
UHGV-0051292_36	eggNOG-mapper	588581.Cpap_1280	NA	NA
UHGV-0051292_36	Pfam	PF08279	HTH domain	HTH_11
UHGV-0051292_36	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0051292_37	Structural annotation	NF041485	NA	NA
UHGV-0051292_39	PHROG	phrog_14697	NA	unknown function
UHGV-0051292_39	UniRef90	UniRef90_A0A2I7REB9	Coil containing protein	NA
UHGV-0051292_47	PHROG	phrog_25265	NA	unknown function
UHGV-0051292_47	UniRef90	UniRef90_A0A0U1L0X4	Prophage Lp2 protein 22	NA
UHGV-0051292_47	eggNOG-mapper	1123288.SOV_2c03800	NA	NA
UHGV-0051292_48	Pfam	PF12664	NA	DUF3789
UHGV-0051292_54	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0051292_54	UniRef90	UniRef90_UPI001E62E49B	integrase	NA
UHGV-0051292_54	eggNOG-mapper	398511.BpOF4_20879	NA	NA
UHGV-0051292_55	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0051292_55	UniRef90	UniRef90_R7FJI5	PF06356 family protein	NA
UHGV-0051292_55	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0051292_55	Pfam	PF06356	NA	DUF1064
UHGV-0051292_55	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0051292_59	eggNOG-mapper	515620.EUBELI_20190	Periplasmic binding protein	NA
UHGV-0051292_59	COG	COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	NA