UHGV-0051351

Genome information

Genome length 34,848 bps

CDS count 58

Completeness 99.81% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051351
vOTU ID	vOTU-009713
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_48596
BioSample	SAMEA2161897
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.23
Jumbo phage	No

Genome content
Genome length	34,848 bps
GC content	56.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.34%
Average CDS length	559.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051351_1	KOfam	K14058	ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA	NA
UHGV-0051351_1	PHROG	phrog_27769	NA	unknown function
UHGV-0051351_1	UniRef90	UniRef90_A0A173WER0	tRNA 2-thiocytidine biosynthesis protein TtcA	NA
UHGV-0051351_1	eggNOG-mapper	718252.FP2_06910	Belongs to the TtcA family	NA
UHGV-0051351_1	Pfam	PF01171	PP-loop family	ATP_bind_3
UHGV-0051351_1	COG	COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	NA
UHGV-0051351_2	PHROG	phrog_15303	NA	unknown function
UHGV-0051351_3	PHROG	phrog_9428	NA	unknown function
UHGV-0051351_3	UniRef90	UniRef90_A0A6I2R426	Serine/threonine protein kinase	NA
UHGV-0051351_3	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0051351_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0051351_4	PHROG	phrog_291	endolysin	lysis
UHGV-0051351_4	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0051351_4	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0051351_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0051351_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0051351_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0051351_5	PHROG	phrog_28526	NA	unknown function
UHGV-0051351_5	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0051351_5	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-0051351_5	Pfam	PF04255	NA	DUF433
UHGV-0051351_7	PHROG	phrog_9534	head protein	head and packaging
UHGV-0051351_7	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0051351_7	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0051351_7	Structural annotation	PF20747	NA	NA
UHGV-0051351_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0051351_8	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0051351_8	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0051351_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0051351_8	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0051351_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0051351_9	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0051351_9	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0051351_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0051351_10	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0051351_10	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0051351_10	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0051351_10	COG	COG1511	NA	NA
UHGV-0051351_11	Structural annotation	PF17318	NA	NA
UHGV-0051351_12	PHROG	phrog_1526	NA	unknown function
UHGV-0051351_12	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0051351_13	PHROG	phrog_117	major tail protein	tail
UHGV-0051351_13	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0051351_13	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0051351_13	COG	COG5492	NA	NA
UHGV-0051351_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0051351_14	PHROG	phrog_123	tail terminator	connector
UHGV-0051351_14	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0051351_14	Structural annotation	PF06141	NA	NA
UHGV-0051351_15	PHROG	phrog_387	neck protein	connector
UHGV-0051351_15	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0051351_15	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0051351_16	PHROG	phrog_501	head closure Hc1	connector
UHGV-0051351_16	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0051351_16	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0051351_16	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0051351_17	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0051351_17	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0051351_17	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0051351_17	Structural annotation	PF09355	NA	NA
UHGV-0051351_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0051351_19	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0051351_19	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0051351_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0051351_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0051351_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0051351_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0051351_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0051351_20	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0051351_20	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0051351_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0051351_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0051351_21	PHROG	phrog_3675	NA	unknown function
UHGV-0051351_21	UniRef90	UniRef90_E7FP13	YjcQ protein	NA
UHGV-0051351_21	eggNOG-mapper	713605.ADHG01000003_gene720	YjcQ protein	NA
UHGV-0051351_21	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0051351_21	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0051351_23	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0051351_23	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0051351_23	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0051351_23	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0051351_23	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0051351_23	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0051351_23	Structural annotation	PF03496, MF_04139, NF040688	NA	NA
UHGV-0051351_24	PHROG	phrog_104	portal protein	head and packaging
UHGV-0051351_24	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0051351_24	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0051351_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0051351_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0051351_25	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0051351_25	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0051351_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0051351_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0051351_26	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0051351_26	Structural annotation	PF19962	NA	NA
UHGV-0051351_27	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051351_27	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0051351_27	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0051351_27	Structural annotation	PF01844	NA	NA
UHGV-0051351_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0051351_29	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0051351_29	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0051351_29	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0051351_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0051351_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0051351_32	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0051351_32	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0051351_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0051351_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0051351_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0051351_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0051351_33	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0051351_33	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0051351_33	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0051351_33	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0051351_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0051351_33	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0051351_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0051351_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051351_34	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0051351_34	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0051351_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0051351_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0051351_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0051351_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0051351_34	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0051351_35	PHROG	phrog_7566	NA	unknown function
UHGV-0051351_35	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0051351_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0051351_37	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0051351_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0051351_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0051351_39	Structural annotation	NF033787	NA	NA
UHGV-0051351_40	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0051351_40	PHROG	phrog_200	lipoprotein	other
UHGV-0051351_40	UniRef90	UniRef90_A0A3A6JM18	Prohibitin family protein	NA
UHGV-0051351_40	eggNOG-mapper	748224.HMPREF9436_03073	SPFH Band 7 PHB domain protein	NA
UHGV-0051351_40	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0051351_40	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0051351_40	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0051351_43	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0051351_45	PHROG	phrog_37789	NA	unknown function
UHGV-0051351_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051351_47	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0051351_48	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0051351_48	Pfam	PF12957	NA	DUF3846
UHGV-0051351_48	Structural annotation	PF12957	NA	NA
UHGV-0051351_52	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051351_52	UniRef90	UniRef90_UPI000E51D163	NA	NA
UHGV-0051351_52	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0051351_52	Pfam	PF13643	NA	DUF4145
UHGV-0051351_52	Structural annotation	PF13643	NA	NA
UHGV-0051351_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0051351_53	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0051351_53	UniRef90	UniRef90_A0A3E2U242	Helix-turn-helix domain-containing protein	NA
UHGV-0051351_53	eggNOG-mapper	888060.HMPREF9081_1958	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0051351_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0051351_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051351_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0051351_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0051351_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0051351_54	UniRef90	UniRef90_A0A2A6Z724	Repressor LexA	NA
UHGV-0051351_54	eggNOG-mapper	748224.HMPREF9436_01793	NA	NA
UHGV-0051351_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051351_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0051351_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0051351_54	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0051351_55	eggNOG-mapper	743718.Isova_0870	NA	NA
UHGV-0051351_55	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0051351_56	PHROG	phrog_22683	NA	unknown function
UHGV-0051351_56	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-0051351_56	eggNOG-mapper	1008453.HMPREF9957_0722	NA	NA
UHGV-0051351_56	AcrCatalog	cluster_3962	NA	NA
UHGV-0051351_56	Pfam	PF13783	NA	DUF4177
UHGV-0051351_56	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0051351_57	UniRef90	UniRef90_A0A843JB96	Virulence RhuM family protein	NA
UHGV-0051351_57	eggNOG-mapper	1280681.AUJZ01000019_gene1748	Virulence protein RhuM family	NA
UHGV-0051351_57	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0051351_57	COG	COG3943	NA	NA
UHGV-0051351_57	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0051351_58	KOfam	K14059	int; integrase	NA
UHGV-0051351_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0051351_58	UniRef90	UniRef90_UPI001C3A4BBE	Site-specific integrase	NA
UHGV-0051351_58	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0051351_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051351_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0051351_58	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA