UHGV-0051392

Genome information

Genome length 30,984 bps

CDS count 45

Completeness 72.56% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051392
vOTU ID	vOTU-017439
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_45686
BioSample	SAMEA2159102
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.13
Jumbo phage	No

Genome content
Genome length	30,984 bps
GC content	45.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.09%
Average CDS length	651.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051392_1	KOfam	K14059	int; integrase	NA
UHGV-0051392_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0051392_1	UniRef90	UniRef90_UPI001C011E7D	tyrosine-type recombinase/integrase	NA
UHGV-0051392_1	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0051392_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051392_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0051392_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0051392_2	eggNOG-mapper	665956.HMPREF1032_03591	NA	NA
UHGV-0051392_3	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0051392_3	PHROG	phrog_19856	NA	unknown function
UHGV-0051392_3	UniRef90	UniRef90_UPI001C01FFC4	restriction endonuclease	NA
UHGV-0051392_3	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0051392_3	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0051392_3	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0051392_3	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0051392_3	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0051392_3	Structural annotation	PF04471, PF09397, NF003162, COG1787	NA	NA
UHGV-0051392_4	PHROG	phrog_87	metallo-protease	other
UHGV-0051392_4	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0051392_4	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0051392_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0051392_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0051392_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0051392_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0051392_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0051392_5	UniRef90	UniRef90_A0A1Q6SLN5	XRE family transcriptional regulator	NA
UHGV-0051392_5	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0051392_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0051392_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051392_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0051392_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0051392_6	UniRef90	UniRef90_UPI00164AD36B	helix-turn-helix transcriptional regulator	NA
UHGV-0051392_6	eggNOG-mapper	743719.PaelaDRAFT_5623	Helix-turn-helix XRE-family like proteins	NA
UHGV-0051392_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051392_8	PHROG	phrog_6058	NA	unknown function
UHGV-0051392_8	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0051392_8	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0051392_9	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0051392_9	Structural annotation	COG3296	NA	NA
UHGV-0051392_12	PHROG	phrog_1499	NA	unknown function
UHGV-0051392_12	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0051392_12	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0051392_12	PADLOC	AAA_15	NA	NA
UHGV-0051392_12	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0051392_12	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0051392_13	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051392_13	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0051392_13	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0051392_13	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0051392_14	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-0051392_14	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0051392_15	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051392_15	UniRef90	UniRef90_UPI001F421301	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0051392_15	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-0051392_15	Pfam	PF12684	NA	DUF3799
UHGV-0051392_15	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0051392_15	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0051392_16	PHROG	phrog_7566	NA	unknown function
UHGV-0051392_16	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0051392_17	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0051392_17	UniRef90	UniRef90_A0A6N3H967	Bro-N domain-containing protein	NA
UHGV-0051392_17	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0051392_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0051392_17	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0051392_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0051392_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0051392_18	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0051392_18	UniRef90	UniRef90_A0A1Q6UYH5	Endodeoxyribonuclease RusA	NA
UHGV-0051392_18	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0051392_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0051392_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0051392_18	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0051392_19	PHROG	phrog_15768	NA	unknown function
UHGV-0051392_19	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-0051392_19	eggNOG-mapper	1125712.HMPREF1316_1538	NA	NA
UHGV-0051392_19	AcrCatalog	cluster_38323	NA	NA
UHGV-0051392_19	Pfam	PF19808	NA	DUF6291
UHGV-0051392_19	Structural annotation	PF19808	NA	NA
UHGV-0051392_23	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0051392_23	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0051392_24	PHROG	phrog_8684	NA	unknown function
UHGV-0051392_24	UniRef90	UniRef90_A0A6N3H7N5	YopX protein	NA
UHGV-0051392_24	eggNOG-mapper	742740.HMPREF9474_03496	YopX protein	NA
UHGV-0051392_24	Pfam	PF09643	YopX protein	YopX
UHGV-0051392_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0051392_25	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0051392_25	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0051392_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0051392_26	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0051392_26	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0051392_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0051392_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0051392_28	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0051392_28	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0051392_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0051392_28	Structural annotation	PF11114	NA	NA
UHGV-0051392_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0051392_29	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0051392_29	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0051392_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0051392_29	COG	COG2369	NA	NA
UHGV-0051392_29	Structural annotation	PF06152	NA	NA
UHGV-0051392_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0051392_31	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0051392_31	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0051392_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0051392_32	PHROG	phrog_283	major head protein	head and packaging
UHGV-0051392_32	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0051392_32	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0051392_32	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0051392_32	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0051392_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0051392_33	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0051392_34	PHROG	phrog_3366	NA	unknown function
UHGV-0051392_34	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-0051392_34	Pfam	PF20536	NA	DUF6751
UHGV-0051392_34	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0051392_35	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0051392_35	Structural annotation	PF12691	NA	NA
UHGV-0051392_36	PHROG	phrog_3099	NA	unknown function
UHGV-0051392_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0051392_37	PHROG	phrog_11299	NA	unknown function
UHGV-0051392_37	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0051392_37	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0051392_37	Pfam	PF20378	NA	DUF6673
UHGV-0051392_37	Structural annotation	PF10666	NA	NA
UHGV-0051392_38	PHROG	phrog_706	NA	unknown function
UHGV-0051392_38	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0051392_38	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0051392_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0051392_38	Structural annotation	PF06854	NA	NA
UHGV-0051392_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0051392_39	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0051392_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0051392_40	PHROG	phrog_1194	NA	unknown function
UHGV-0051392_40	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0051392_40	Pfam	PF20458	NA	DUF6711
UHGV-0051392_40	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0051392_41	PHROG	phrog_18190	NA	unknown function
UHGV-0051392_41	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0051392_41	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0051392_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0051392_41	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0051392_42	PHROG	phrog_17196	kinase	other
UHGV-0051392_42	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0051392_42	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0051392_43	PHROG	phrog_1863	NA	unknown function
UHGV-0051392_43	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0051392_44	PHROG	phrog_443	holin	lysis
UHGV-0051392_44	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0051392_44	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0051392_44	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0051392_44	Structural annotation	PF16945	NA	NA
UHGV-0051392_45	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0051392_45	PHROG	phrog_7	endolysin	lysis
UHGV-0051392_45	UniRef90	UniRef90_A0A6L6L979	Lysozyme	NA
UHGV-0051392_45	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0051392_45	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0051392_45	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0051392_45	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0051392_45	HAMAP	MF_04110	Endolysin	NA
UHGV-0051392_45	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA