UHGV-0051415

Genome information

Genome length 18,454 bps

CDS count 23

Completeness 96.32% (high-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051415
vOTU ID	vOTU-012770
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_51798
BioSample	SAMEA2157747
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.17
Jumbo phage	No

Genome content
Genome length	18,454 bps
GC content	36.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	91.13%
Average CDS length	738.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051415_1	KOfam	K01308	yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]	NA
UHGV-0051415_1	eggNOG-mapper	1430331.EP10_05670	Zn_pept	NA
UHGV-0051415_1	Pfam	PF00246	Zinc carboxypeptidase	Peptidase_M14
UHGV-0051415_1	COG	COG2866	Murein tripeptide amidase MpaA	NA
UHGV-0051415_1	Structural annotation	PF00246, MF_02211, NF007897, COG2866	NA	NA
UHGV-0051415_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0051415_2	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0051415_2	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0051415_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0051415_3	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0051415_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0051415_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0051415_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0051415_4	PHROG	phrog_2248	tail protein	tail
UHGV-0051415_4	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-0051415_4	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0051415_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0051415_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0051415_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0051415_5	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0051415_5	PHROG	phrog_11541	NA	unknown function
UHGV-0051415_5	UniRef90	UniRef90_A0A0Q3S7R7	SGNH_hydro domain-containing protein	NA
UHGV-0051415_5	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0051415_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0051415_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0051415_6	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0051415_6	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0051415_6	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0051415_8	PHROG	phrog_8949	NA	unknown function
UHGV-0051415_8	eggNOG-mapper	796945.HMPREF1145_1316	Bacterial capsule synthesis protein PGA_cap	NA
UHGV-0051415_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0051415_8	COG	COG2843	Poly-gamma-glutamate biosynthesis protein CapA/YwtB (capsule formation), metallophosphatase superfamily	NA
UHGV-0051415_8	Structural annotation	PF18013	NA	NA
UHGV-0051415_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0051415_9	PHROG	phrog_435	endolysin	lysis
UHGV-0051415_9	UniRef90	UniRef90_A0A374ADF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0051415_9	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0051415_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0051415_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0051415_9	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0051415_10	PHROG	phrog_4898	holin	lysis
UHGV-0051415_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0051415_11	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0051415_11	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0051415_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0051415_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0051415_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0051415_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0051415_14	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0051415_14	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0051415_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0051415_14	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0051415_16	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0051415_16	Structural annotation	PF17427	NA	NA
UHGV-0051415_17	Structural annotation	PF17548	NA	NA
UHGV-0051415_18	PHROG	phrog_22292	NA	unknown function
UHGV-0051415_18	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA