UHGV-0051489

Genome information

Genome length 22,573 bps

CDS count 32

Completeness 58.79% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051489
vOTU ID	vOTU-036281
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_52331
BioSample	SAMEA2146600
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.66
Jumbo phage	No

Genome content
Genome length	22,573 bps
GC content	43.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.97%
Average CDS length	662.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051489_1	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0051489_1	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0051489_1	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0051489_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0051489_3	UniRef90	UniRef90_A0A1C6HBH6	Phage minor capsid protein 2	NA
UHGV-0051489_3	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0051489_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0051489_3	COG	COG2369	NA	NA
UHGV-0051489_3	Structural annotation	PF06152	NA	NA
UHGV-0051489_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0051489_4	UniRef90	UniRef90_R6RJD0	Putative phage minor capsid protein	NA
UHGV-0051489_4	eggNOG-mapper	1122918.KB907248_gene4503	NA	NA
UHGV-0051489_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0051489_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0051489_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0051489_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0051489_5	UniRef90	UniRef90_R6RCX9	Phage terminase large subunit PBSX family	NA
UHGV-0051489_5	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0051489_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0051489_5	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0051489_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0051489_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0051489_6	UniRef90	UniRef90_R6RJD3	Phage Terminase Small Subunit	NA
UHGV-0051489_6	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0051489_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0051489_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0051489_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0051489_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0051489_7	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-0051489_7	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0051489_7	Structural annotation	PF04545	NA	NA
UHGV-0051489_9	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0051489_9	UniRef90	UniRef90_UPI001C3EDFA5	class I SAM-dependent methyltransferase	NA
UHGV-0051489_9	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0051489_9	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0051489_9	Pfam	PF04448	NA	DUF551
UHGV-0051489_9	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0051489_10	Structural annotation	PF02050	NA	NA
UHGV-0051489_11	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0051489_11	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0051489_11	UniRef90	UniRef90_A0A6P1YAH9	ATP-binding protein	NA
UHGV-0051489_11	eggNOG-mapper	293826.Amet_2601	DNA replication protein	NA
UHGV-0051489_11	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0051489_11	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0051489_11	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0051489_12	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0051489_12	UniRef90	UniRef90_UPI001C03418C	conserved phage C-terminal domain-containing protein	NA
UHGV-0051489_12	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0051489_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0051489_12	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0051489_13	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0051489_13	UniRef90	UniRef90_A0A3D4KYS5	ERCC4 domain-containing protein	NA
UHGV-0051489_13	eggNOG-mapper	1227360.C176_12553	ERCC4 domain	NA
UHGV-0051489_13	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0051489_13	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0051489_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0051489_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051489_14	UniRef90	UniRef90_A0A174Z7R4	Single-stranded DNA-binding protein	NA
UHGV-0051489_14	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-0051489_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0051489_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0051489_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0051489_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0051489_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0051489_15	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051489_15	UniRef90	UniRef90_A0A352DNR3	NA	NA
UHGV-0051489_15	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0051489_15	Pfam	PF12684	NA	DUF3799
UHGV-0051489_15	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0051489_15	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0051489_16	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0051489_16	PHROG	phrog_1499	NA	unknown function
UHGV-0051489_16	UniRef90	UniRef90_A0A1C6FNE5	Chromosome segregation protein	NA
UHGV-0051489_16	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0051489_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-0051489_16	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0051489_16	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0051489_17	PHROG	phrog_21613	NA	unknown function
UHGV-0051489_17	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0051489_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0051489_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0051489_18	UniRef90	UniRef90_UPI000F535B89	DNA cytosine methyltransferase	NA
UHGV-0051489_18	eggNOG-mapper	1007103.AFHW01000096_gene3277	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0051489_18	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0051489_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0051489_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0051489_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0051489_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0051489_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0051489_20	UniRef90	UniRef90_UPI001D091C0C	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0051489_20	eggNOG-mapper	1291050.JAGE01000002_gene3264	sulfate reduction	NA
UHGV-0051489_20	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0051489_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0051489_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0051489_20	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0051489_21	Structural annotation	MF_01549, TIGR02228	NA	NA
UHGV-0051489_26	UniRef90	UniRef90_A0A374HW23	Carboxypeptidase	NA
UHGV-0051489_28	UniRef90	UniRef90_R6TEQ2	Conserved domain protein	NA
UHGV-0051489_28	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0051489_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0051489_28	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0051489_29	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0051489_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0051489_29	UniRef90	UniRef90_R6T2B0	Peptidase S24-like protein	NA
UHGV-0051489_29	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0051489_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051489_29	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0051489_29	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0051489_29	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0051489_30	Pfam	PF13428	Tetratricopeptide repeat	TPR_14
UHGV-0051489_31	KOfam	K14059	int; integrase	NA
UHGV-0051489_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0051489_31	UniRef90	UniRef90_R6RJI6	Integrase	NA
UHGV-0051489_31	eggNOG-mapper	1232449.BAHV02000008_gene609	Site-specific recombinase, phage integrase family	NA
UHGV-0051489_31	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0051489_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051489_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0051489_31	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA