UHGV-0051644

Genome information

Genome length 30,379 bps

CDS count 60

Completeness 90.13% (high-quality)

geNomad score 0.9566

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051644
vOTU ID	vOTU-063059
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_37290
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9566
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.2
Jumbo phage	No

Genome content
Genome length	30,379 bps
GC content	27.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.66%
Average CDS length	476.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051644_1	UniRef90	UniRef90_A0A0K9MDB1	DNA-binding protein	NA
UHGV-0051644_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051644_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0051644_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0051644_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0051644_4	PHROG	phrog_1123	NA	unknown function
UHGV-0051644_6	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0051644_6	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-0051644_6	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0051644_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0051644_9	PHROG	phrog_674	NA	unknown function
UHGV-0051644_9	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0051644_9	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0051644_9	Pfam	PF07083	NA	DUF1351
UHGV-0051644_9	Structural annotation	PF07083	NA	NA
UHGV-0051644_10	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051644_10	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0051644_10	eggNOG-mapper	1122173.AXVL01000068_gene1414	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0051644_10	Pfam	PF03837	RecT family	RecT
UHGV-0051644_10	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0051644_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0051644_10	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0051644_11	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0051644_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0051644_11	UniRef90	UniRef90_R6YG58	Lactamase_B domain-containing protein	NA
UHGV-0051644_11	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0051644_11	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0051644_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0051644_11	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0051644_12	PHROG	phrog_1389	NA	unknown function
UHGV-0051644_12	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0051644_12	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0051644_13	PHROG	phrog_7566	NA	unknown function
UHGV-0051644_13	UniRef90	UniRef90_A0A1I0JPK6	Phosphoenolpyruvate carboxykinase	NA
UHGV-0051644_13	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0051644_14	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-0051644_14	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0051644_14	UniRef90	UniRef90_A0A7X8D1J2	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0051644_14	eggNOG-mapper	871968.DESME_08990	NA	NA
UHGV-0051644_14	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-0051644_14	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-0051644_18	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0051644_18	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0051644_18	UniRef90	UniRef90_UPI001C63C792	RtcB family protein	NA
UHGV-0051644_18	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0051644_18	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0051644_18	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0051644_19	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0051644_19	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0051644_19	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0051644_19	eggNOG-mapper	573061.Clocel_3404	tRNA-splicing ligase RtcB	NA
UHGV-0051644_19	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0051644_19	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0051644_19	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0051644_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0051644_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0051644_29	Structural annotation	PF06530, PF21662, MF_00245, MF_00683, NF001068, COG2739	NA	NA
UHGV-0051644_34	eggNOG-mapper	632518.Calow_0826	NA	NA
UHGV-0051644_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0051644_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0051644_35	UniRef90	UniRef90_UPI0019D16F13	PBSX family phage terminase large subunit	NA
UHGV-0051644_35	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0051644_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0051644_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0051644_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0051644_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0051644_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0051644_36	UniRef90	UniRef90_F2JPK0	Bacteriophage portal protein, SPP1 Gp6-like protein	NA
UHGV-0051644_36	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0051644_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0051644_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0051644_37	UniRef90	UniRef90_A0A349GQA4	Phage capsid protein (Fragment)	NA
UHGV-0051644_37	eggNOG-mapper	1120998.AUFC01000030_gene2233	NA	NA
UHGV-0051644_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0051644_37	COG	COG2369	NA	NA
UHGV-0051644_37	Structural annotation	PF06152	NA	NA
UHGV-0051644_38	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0051644_38	PHROG	phrog_3895	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0051644_38	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0051644_38	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0051644_38	COG	COG2369	NA	NA
UHGV-0051644_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0051644_40	UniRef90	UniRef90_UPI000A271E08	phage scaffolding protein	NA
UHGV-0051644_40	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0051644_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0051644_40	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0051644_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0051644_41	UniRef90	UniRef90_A0A6B4I5J9	N4-gp56 family major capsid protein	NA
UHGV-0051644_41	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0051644_41	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0051644_41	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0051644_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0051644_42	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0051644_43	PHROG	phrog_3366	NA	unknown function
UHGV-0051644_43	Pfam	PF20536	NA	DUF6751
UHGV-0051644_43	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0051644_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0051644_44	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0051644_44	eggNOG-mapper	536233.CLO_0889	Minor capsid protein	NA
UHGV-0051644_44	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0051644_44	Structural annotation	PF11114	NA	NA
UHGV-0051644_45	PHROG	phrog_3266	tail completion	connector
UHGV-0051644_45	UniRef90	UniRef90_UPI001F261AF5	chloramphenicol resistance protein	NA
UHGV-0051644_45	eggNOG-mapper	1499683.CCFF01000017_gene2570	NA	NA
UHGV-0051644_45	Structural annotation	PF12691	NA	NA
UHGV-0051644_46	PHROG	phrog_3099	NA	unknown function
UHGV-0051644_46	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-0051644_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0051644_47	PHROG	phrog_4450	NA	unknown function
UHGV-0051644_47	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0051644_47	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0051644_47	Pfam	PF20378	NA	DUF6673
UHGV-0051644_47	Structural annotation	PF20378	NA	NA
UHGV-0051644_48	PHROG	phrog_706	NA	unknown function
UHGV-0051644_48	UniRef90	UniRef90_UPI00117869B1	bacteriophage Gp15 family protein	NA
UHGV-0051644_48	eggNOG-mapper	1292035.H476_1007	Bacteriophage Gp15 protein	NA
UHGV-0051644_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0051644_48	Structural annotation	PF06854	NA	NA
UHGV-0051644_49	PHROG	phrog_24502	zinc-finger domain protein	other
UHGV-0051644_49	eggNOG-mapper	1282887.AUJG01000002_gene762	NA	NA
UHGV-0051644_49	Structural annotation	PF02701	NA	NA
UHGV-0051644_50	UniRef90	UniRef90_UPI0005590206	NA	NA
UHGV-0051644_50	eggNOG-mapper	1282887.AUJG01000002_gene763	NA	NA
UHGV-0051644_50	Pfam	PF09858	NA	DUF2085
UHGV-0051644_50	COG	COG3815	NA	NA
UHGV-0051644_50	Structural annotation	PF09858, COG3815	NA	NA
UHGV-0051644_51	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0051644_51	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0051644_52	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0051644_52	eggNOG-mapper	673832.D2IYX6_9CAUD	transmembrane transport	NA
UHGV-0051644_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0051644_52	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0051644_52	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0051644_53	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0051644_56	PHROG	phrog_9116	tail protein	tail
UHGV-0051644_56	UniRef90	UniRef90_A0A3D1PJI0	Collar domain-containing protein	NA
UHGV-0051644_56	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-0051644_56	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0051644_56	COG	COG4675	Phage tail collar domain	NA
UHGV-0051644_56	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0051644_58	PHROG	phrog_13256	NA	unknown function
UHGV-0051644_58	eggNOG-mapper	1160721.RBI_II00522	NA	NA