UHGV-0051682

Genome information

Genome length 36,241 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9668

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051682
vOTU ID	vOTU-070104
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_51703
BioSample	SAMEA2147114
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9668
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.62
Jumbo phage	No

Genome content
Genome length	36,241 bps
GC content	46.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	87.67%
Average CDS length	571.50 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051682_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0051682_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0051682_1	UniRef90	UniRef90_UPI001D05C6CD	recombinase family protein	NA
UHGV-0051682_1	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-0051682_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0051682_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0051682_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0051682_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0051682_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0051682_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0051682_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0051682_2	UniRef90	UniRef90_UPI000685BB22	3'-5' exoribonuclease	NA
UHGV-0051682_2	eggNOG-mapper	1201292.DR75_1431	3' exoribonuclease, RNase T-like	NA
UHGV-0051682_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0051682_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0051682_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0051682_2	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0051682_2	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-0051682_3	PHROG	phrog_87	metallo-protease	other
UHGV-0051682_3	UniRef90	UniRef90_A0A8D5A4J0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0051682_3	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-0051682_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0051682_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0051682_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0051682_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0051682_4	UniRef90	UniRef90_A0A8D5A0Z5	HTH cro/C1-type domain-containing protein	NA
UHGV-0051682_4	eggNOG-mapper	1300150.EMQU_0756	Peptidase S24-like	NA
UHGV-0051682_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051682_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0051682_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0051682_5	UniRef90	UniRef90_UPI001D082226	helix-turn-helix transcriptional regulator	NA
UHGV-0051682_5	eggNOG-mapper	1140002.I570_02882	Helix-turn-helix XRE-family like proteins	NA
UHGV-0051682_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051682_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0051682_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0051682_8	PHROG	phrog_585	NA	unknown function
UHGV-0051682_8	UniRef90	UniRef90_UPI00042161F7	NA	NA
UHGV-0051682_8	eggNOG-mapper	862517.HMPREF9225_1672	NA	NA
UHGV-0051682_8	Pfam	PF10711	NA	DUF2513
UHGV-0051682_8	Structural annotation	PF10711, MF_01819, TIGR04176, COG1695	NA	NA
UHGV-0051682_9	PHROG	phrog_14367	NA	unknown function
UHGV-0051682_9	UniRef90	UniRef90_A0A1G5VJC5	LysM domain-containing protein	NA
UHGV-0051682_9	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-0051682_9	Pfam	PF01476	LysM domain	LysM
UHGV-0051682_9	COG	COG1388	LysM repeat	NA
UHGV-0051682_9	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0051682_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051682_13	UniRef90	UniRef90_A0A316LPC0	Endonuclease	NA
UHGV-0051682_13	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-0051682_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0051682_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0051682_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0051682_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0051682_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0051682_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051682_15	UniRef90	UniRef90_A0A316M5N2	Recombinase RecT	NA
UHGV-0051682_15	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-0051682_15	Pfam	PF03837	RecT family	RecT
UHGV-0051682_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0051682_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0051682_15	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0051682_16	PHROG	phrog_9403	NA	unknown function
UHGV-0051682_17	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0051682_17	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0051682_17	UniRef90	UniRef90_UPI0003FCA6D4	DnaD domain protein	NA
UHGV-0051682_17	eggNOG-mapper	1273103.NM10_01164	DnaD domain protein	NA
UHGV-0051682_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0051682_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0051682_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0051682_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0051682_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0051682_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0051682_18	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-0051682_18	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-0051682_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0051682_18	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0051682_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0051682_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051682_20	UniRef90	UniRef90_D2RN22	Single-stranded DNA-binding protein	NA
UHGV-0051682_20	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0051682_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0051682_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0051682_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0051682_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0051682_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0051682_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0051682_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0051682_26	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0051682_26	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0051682_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0051682_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0051682_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0051682_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0051682_27	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-0051682_27	eggNOG-mapper	1111454.HMPREF1250_0269	NA	NA
UHGV-0051682_27	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-0051682_28	PHROG	phrog_13845	NA	unknown function
UHGV-0051682_28	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0051682_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0051682_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0051682_29	UniRef90	UniRef90_UPI000406183D	terminase large subunit	NA
UHGV-0051682_29	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-0051682_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0051682_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0051682_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0051682_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0051682_30	UniRef90	UniRef90_UPI0003FDC1C6	phage portal protein	NA
UHGV-0051682_30	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-0051682_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0051682_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0051682_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0051682_30	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0051682_31	KOfam	K06904	NA	NA
UHGV-0051682_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0051682_31	UniRef90	UniRef90_UPI000415264F	HK97 family phage prohead protease	NA
UHGV-0051682_31	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0051682_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0051682_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0051682_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0051682_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0051682_32	UniRef90	UniRef90_UPI000400CBEC	phage major capsid protein	NA
UHGV-0051682_32	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0051682_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0051682_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0051682_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0051682_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0051682_33	PHROG	phrog_2616	NA	unknown function
UHGV-0051682_33	Structural annotation	PF01281	NA	NA
UHGV-0051682_34	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0051682_34	UniRef90	UniRef90_UPI00041E0DD1	head-tail connector protein	NA
UHGV-0051682_34	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-0051682_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0051682_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0051682_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-0051682_35	UniRef90	UniRef90_UPI000415E870	phage head closure protein	NA
UHGV-0051682_35	eggNOG-mapper	1285586.H131_21292	Phage head-tail joining protein	NA
UHGV-0051682_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0051682_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0051682_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0051682_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0051682_36	UniRef90	UniRef90_UPI000410849E	HK97 gp10 family phage protein	NA
UHGV-0051682_36	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0051682_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0051682_36	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0051682_37	PHROG	phrog_525	NA	unknown function
UHGV-0051682_37	Pfam	PF20765	NA	DUF6838
UHGV-0051682_38	PHROG	phrog_1480	tail sheath	tail
UHGV-0051682_38	UniRef90	UniRef90_A0A7X2XHA8	Phage tail sheath protein	NA
UHGV-0051682_38	eggNOG-mapper	1095747.HMPREF1049_2005	Phage tail sheath C-terminal domain	NA
UHGV-0051682_38	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0051682_38	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0051682_39	PHROG	phrog_365	tail protein	tail
UHGV-0051682_39	UniRef90	UniRef90_UPI000429BBBA	phage tail tube protein	NA
UHGV-0051682_39	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0051682_39	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0051682_39	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0051682_40	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0051682_40	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0051682_41	PHROG	phrog_7972	NA	unknown function
UHGV-0051682_41	UniRef90	UniRef90_A5TX46	Possible bacteriophage tail protein	NA
UHGV-0051682_41	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-0051682_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0051682_42	PHROG	phrog_5184	NA	unknown function
UHGV-0051682_42	UniRef90	UniRef90_A0A7X5CTQ5	Phage portal protein	NA
UHGV-0051682_42	eggNOG-mapper	97138.C820_00603	LysM domain	NA
UHGV-0051682_42	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0051682_43	PHROG	phrog_400	tail protein	tail
UHGV-0051682_43	UniRef90	UniRef90_UPI000F0469E9	CHAP domain-containing protein	NA
UHGV-0051682_43	eggNOG-mapper	1449126.JQKL01000051_gene3158	NA	NA
UHGV-0051682_43	COG	COG3500	NA	NA
UHGV-0051682_43	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0051682_44	PHROG	phrog_579	NA	unknown function
UHGV-0051682_44	UniRef90	UniRef90_UPI00047CF220	NA	NA
UHGV-0051682_44	eggNOG-mapper	1095747.HMPREF1049_1996	NA	NA
UHGV-0051682_44	Pfam	PF10844	NA	DUF2577
UHGV-0051682_44	Structural annotation	PF10844	NA	NA
UHGV-0051682_45	UniRef90	UniRef90_UPI001D06F821	NA	NA
UHGV-0051682_45	eggNOG-mapper	1002809.SSIL_1436	NA	NA
UHGV-0051682_45	Pfam	PF10934	NA	DUF2634
UHGV-0051682_45	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0051682_45	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0051682_46	PHROG	phrog_6	baseplate protein	tail
UHGV-0051682_46	UniRef90	UniRef90_UPI001D063BBB	baseplate J/gp47 family protein	NA
UHGV-0051682_46	eggNOG-mapper	1123239.KB898628_gene3248	Baseplate J-like protein	NA
UHGV-0051682_46	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0051682_46	COG	COG3299	NA	NA
UHGV-0051682_46	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0051682_47	PHROG	phrog_521	tail protein	tail
UHGV-0051682_47	UniRef90	UniRef90_UPI000478E68D	NA	NA
UHGV-0051682_47	eggNOG-mapper	469616.FMAG_00546	NA	NA
UHGV-0051682_47	COG	COG3778	NA	NA
UHGV-0051682_47	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0051682_48	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0051682_48	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0051682_48	Structural annotation	NF012201	NA	NA
UHGV-0051682_50	KOfam	K14059	int; integrase	NA
UHGV-0051682_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0051682_50	UniRef90	UniRef90_A0A1M6NZU6	Site-specific recombinase XerD	NA
UHGV-0051682_50	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0051682_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051682_50	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0051682_50	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0051682_51	PHROG	phrog_32639	NA	unknown function
UHGV-0051682_53	PHROG	phrog_4105	NA	unknown function
UHGV-0051682_53	eggNOG-mapper	1235790.C805_00613	NA	NA
UHGV-0051682_54	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-0051682_55	KOfam	K07273	acm; lysozyme	NA
UHGV-0051682_55	PHROG	phrog_291	endolysin	lysis
UHGV-0051682_55	UniRef90	UniRef90_R7MX83	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0051682_55	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0051682_55	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0051682_55	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0051682_55	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0051682_56	PHROG	phrog_18996	NA	unknown function
UHGV-0051682_56	eggNOG-mapper	1273103.NM10_01746	NA	NA