UHGV-0051798

Genome information

Genome length 34,805 bps

CDS count 51

Completeness 95.55% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051798
vOTU ID	vOTU-061843
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_57566
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.55% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.35
Jumbo phage	No

Genome content
Genome length	34,805 bps
GC content	59.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.72%
Average CDS length	616.29 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051798_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0051798_3	PHROG	phrog_1129	holin	lysis
UHGV-0051798_3	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0051798_3	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0051798_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0051798_3	Structural annotation	PF16079	NA	NA
UHGV-0051798_4	PHROG	phrog_4105	NA	unknown function
UHGV-0051798_4	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0051798_5	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0051798_5	PHROG	phrog_7698	endolysin	lysis
UHGV-0051798_5	UniRef90	UniRef90_E5DTQ2	Putative muramidase	NA
UHGV-0051798_5	eggNOG-mapper	1410624.JNKK01000045_gene544	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0051798_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0051798_5	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0051798_5	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0051798_5	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0051798_8	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-0051798_8	Structural annotation	PF10651, NF041074	NA	NA
UHGV-0051798_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0051798_9	UniRef90	UniRef90_UPI00164A5272	phage tail protein	NA
UHGV-0051798_9	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0051798_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0051798_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0051798_9	COG	COG4926	Phage-related protein	NA
UHGV-0051798_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0051798_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0051798_10	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0051798_10	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0051798_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0051798_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0051798_11	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0051798_11	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0051798_11	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0051798_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0051798_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0051798_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0051798_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0051798_12	PHROG	phrog_1633	NA	unknown function
UHGV-0051798_12	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-0051798_12	eggNOG-mapper	1069534.LRC_07350	NA	NA
UHGV-0051798_12	Pfam	PF17318	NA	DUF5361
UHGV-0051798_12	Structural annotation	PF17318	NA	NA
UHGV-0051798_13	PHROG	phrog_1526	NA	unknown function
UHGV-0051798_13	UniRef90	UniRef90_A0A139NAV4	NA	NA
UHGV-0051798_13	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0051798_14	PHROG	phrog_117	major tail protein	tail
UHGV-0051798_14	UniRef90	UniRef90_A0A1Q6T308	Phage tail protein	NA
UHGV-0051798_14	eggNOG-mapper	1232446.BAIE02000011_gene1591	domain, Protein	NA
UHGV-0051798_14	COG	COG5492	NA	NA
UHGV-0051798_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0051798_15	PHROG	phrog_123	tail terminator	connector
UHGV-0051798_15	eggNOG-mapper	1123263.AUKY01000068_gene495	NA	NA
UHGV-0051798_15	Structural annotation	PF06141	NA	NA
UHGV-0051798_16	PHROG	phrog_387	neck protein	connector
UHGV-0051798_16	eggNOG-mapper	1214184.ALKY01000039_gene914	NA	NA
UHGV-0051798_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0051798_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0051798_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0051798_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0051798_18	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0051798_18	Pfam	PF09355	NA	Phage_Gp19
UHGV-0051798_18	Structural annotation	PF09355	NA	NA
UHGV-0051798_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0051798_19	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0051798_19	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0051798_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0051798_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0051798_20	UniRef90	UniRef90_A0A8J6IQD2	Phage scaffolding protein	NA
UHGV-0051798_20	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0051798_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0051798_21	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0051798_21	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0051798_21	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0051798_21	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0051798_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0051798_22	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0051798_22	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0051798_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0051798_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0051798_23	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0051798_23	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0051798_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0051798_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0051798_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0051798_24	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0051798_24	Structural annotation	PF19962	NA	NA
UHGV-0051798_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051798_25	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0051798_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0051798_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0051798_27	UniRef90	UniRef90_A0A2V2FTX8	Sigma70_r4 domain-containing protein	NA
UHGV-0051798_27	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0051798_27	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0051798_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0051798_28	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0051798_28	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0051798_28	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0051798_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0051798_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0051798_28	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0051798_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0051798_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0051798_29	UniRef90	UniRef90_A0A1Q6T3I8	AAA_31 domain-containing protein	NA
UHGV-0051798_29	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0051798_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-0051798_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0051798_29	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0051798_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0051798_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0051798_30	UniRef90	UniRef90_D1PNB9	DNA helicase	NA
UHGV-0051798_30	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0051798_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0051798_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0051798_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0051798_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0051798_31	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0051798_31	UniRef90	UniRef90_UPI000F632BBD	helix-turn-helix domain-containing protein	NA
UHGV-0051798_31	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0051798_31	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0051798_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0051798_31	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0051798_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0051798_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051798_32	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-0051798_32	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0051798_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0051798_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0051798_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0051798_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0051798_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0051798_33	PHROG	phrog_1029	NA	unknown function
UHGV-0051798_33	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0051798_33	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0051798_34	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0051798_34	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0051798_35	PHROG	phrog_7566	NA	unknown function
UHGV-0051798_35	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0051798_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0051798_36	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0051798_36	Pfam	PF05772	NinB protein	NinB
UHGV-0051798_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0051798_37	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0051798_38	PHROG	phrog_10280	NA	unknown function
UHGV-0051798_38	eggNOG-mapper	903814.ELI_0195	NA	NA
UHGV-0051798_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0051798_39	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0051798_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0051798_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0051798_42	UniRef90	UniRef90_A0A7G5MY84	XRE family transcriptional regulator	NA
UHGV-0051798_42	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0051798_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051798_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0051798_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0051798_44	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0051798_44	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0051798_44	UniRef90	UniRef90_A0A1M4ZHQ6	DNA polymerase-3 subunit epsilon	NA
UHGV-0051798_44	eggNOG-mapper	1120947.ATUX01000009_gene152	EXOIII	NA
UHGV-0051798_44	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0051798_44	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0051798_44	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0051798_44	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0051798_44	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0051798_45	KOfam	K14059	int; integrase	NA
UHGV-0051798_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0051798_45	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-0051798_45	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0051798_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0051798_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051798_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0051798_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0051798_46	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0051798_47	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0051798_48	PHROG	phrog_16490	NA	unknown function
UHGV-0051798_48	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0051798_51	UniRef90	UniRef90_A0A7X2NE42	DNA-binding protein	NA
UHGV-0051798_51	eggNOG-mapper	78345.BMERY_0692	NA	NA