UHGV-0051843

Genome information

Genome length 32,395 bps

CDS count 52

Completeness 67.66% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051843
vOTU ID	vOTU-036129
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_37818
BioSample	SAMEA2155902
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.14
Jumbo phage	No

Genome content
Genome length	32,395 bps
GC content	37.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.11%
Average CDS length	574.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051843_4	UniRef90	UniRef90_C9L7N2	HTH cro/C1-type domain-containing protein	NA
UHGV-0051843_4	eggNOG-mapper	887325.HMPREF0381_1083	Helix-turn-helix XRE-family like proteins	NA
UHGV-0051843_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051843_4	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0051843_5	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0051843_5	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0051843_5	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0051843_5	COG	COG5410	NA	NA
UHGV-0051843_5	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0051843_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-0051843_6	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0051843_6	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0051843_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0051843_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0051843_7	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0051843_7	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0051843_7	COG	COG2369	NA	NA
UHGV-0051843_7	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0051843_9	PHROG	phrog_544	major head protein	head and packaging
UHGV-0051843_9	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0051843_9	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0051843_10	eggNOG-mapper	1203606.HMPREF1526_01905	Collagen triple helix repeat (20 copies)	NA
UHGV-0051843_10	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0051843_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0051843_11	UniRef90	UniRef90_UPI0018A0DAC6	phage head-tail connector protein	NA
UHGV-0051843_11	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0051843_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0051843_11	Structural annotation	TIGR01560	NA	NA
UHGV-0051843_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0051843_14	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0051843_15	PHROG	phrog_158	major tail protein	tail
UHGV-0051843_15	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0051843_15	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0051843_15	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0051843_16	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0051843_16	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0051843_16	Pfam	PF16478	NA	DUF5055
UHGV-0051843_16	Structural annotation	PF16478	NA	NA
UHGV-0051843_17	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0051843_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0051843_18	UniRef90	UniRef90_A0A3D9GHV1	Phage-related protein	NA
UHGV-0051843_18	eggNOG-mapper	1499683.CCFF01000014_gene3900	phage tail tape measure protein	NA
UHGV-0051843_18	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0051843_19	PHROG	phrog_1194	NA	unknown function
UHGV-0051843_19	eggNOG-mapper	1007103.AFHW01000096_gene3257	NA	NA
UHGV-0051843_19	Pfam	PF20458	NA	DUF6711
UHGV-0051843_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0051843_20	PHROG	phrog_18190	NA	unknown function
UHGV-0051843_20	UniRef90	UniRef90_A0A6L5Y189	Peptidase S74 domain-containing protein	NA
UHGV-0051843_20	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0051843_20	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0051843_21	PHROG	phrog_372	tail protein	tail
UHGV-0051843_21	UniRef90	UniRef90_A0A898FLY0	Peptidase S74 domain-containing protein	NA
UHGV-0051843_21	eggNOG-mapper	428127.EUBDOL_01566	domain, Protein	NA
UHGV-0051843_21	Pfam	PF05895	NA	DUF859
UHGV-0051843_21	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0051843_21	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0051843_21	Structural annotation	PF05895, MF_04116, MF_00791, NF010681, COG3291, COG5608	NA	NA
UHGV-0051843_22	KOfam	K11089	TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein	NA
UHGV-0051843_22	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051843_22	UniRef90	UniRef90_G8LV85	TROVE domain-containing protein	NA
UHGV-0051843_22	eggNOG-mapper	1196322.A370_03101	TROVE domain	NA
UHGV-0051843_22	Pfam	PF05731	TROVE domain	TROVE
UHGV-0051843_22	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0051843_22	Structural annotation	PF05731, PF05762, MF_01340, NF041674, COG3552	NA	NA
UHGV-0051843_23	PHROG	phrog_16241	endolysin	lysis
UHGV-0051843_23	UniRef90	UniRef90_UPI000911095D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0051843_23	eggNOG-mapper	1042156.CXIVA_07150	Glycosyl hydrolases family 25	NA
UHGV-0051843_23	Pfam	PF05257	CHAP domain	CHAP
UHGV-0051843_23	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0051843_23	COG	COG1388	LysM repeat	NA
UHGV-0051843_24	PHROG	phrog_881	holin	lysis
UHGV-0051843_24	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0051843_24	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0051843_24	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0051843_24	Structural annotation	PF16938	NA	NA
UHGV-0051843_26	KOfam	K14059	int; integrase	NA
UHGV-0051843_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0051843_26	UniRef90	UniRef90_A0A6N7S5Q9	Tyrosine-type recombinase/integrase	NA
UHGV-0051843_26	eggNOG-mapper	1123263.AUKY01000072_gene2117	Phage integrase family	NA
UHGV-0051843_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051843_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0051843_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0051843_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0051843_27	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0051843_27	UniRef90	UniRef90_A0A1Y4LWN9	HTH cro/C1-type domain-containing protein	NA
UHGV-0051843_27	eggNOG-mapper	1232446.BAIE02000016_gene1347	PFAM peptidase	NA
UHGV-0051843_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051843_27	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0051843_27	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0051843_27	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0051843_28	UniRef90	UniRef90_A0A6A7K9R2	NA	NA
UHGV-0051843_28	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0051843_28	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0051843_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0051843_29	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0051843_29	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0051843_32	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051843_32	UniRef90	UniRef90_UPI0018AB7FC5	ERF family protein	NA
UHGV-0051843_32	eggNOG-mapper	1321774.HMPREF9108_02351	ERF superfamily	NA
UHGV-0051843_32	Pfam	PF04404	ERF superfamily	ERF
UHGV-0051843_32	Structural annotation	PF04404	NA	NA
UHGV-0051843_33	PHROG	phrog_6244	NA	unknown function
UHGV-0051843_33	eggNOG-mapper	1158609.I586_00060	YqaJ-like viral recombinase domain	NA
UHGV-0051843_33	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0051843_34	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051843_34	UniRef90	UniRef90_A0A3D5XTJ3	Cas_Cas4 domain-containing protein	NA
UHGV-0051843_34	eggNOG-mapper	585502.HMPREF0645_2602	NA	NA
UHGV-0051843_34	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0051843_35	PHROG	phrog_1233	NA	unknown function
UHGV-0051843_35	UniRef90	UniRef90_K6D4R3	NA	NA
UHGV-0051843_35	eggNOG-mapper	1295642.H839_08269	NA	NA
UHGV-0051843_36	PHROG	phrog_1389	NA	unknown function
UHGV-0051843_36	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0051843_36	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0051843_37	PHROG	phrog_7566	NA	unknown function
UHGV-0051843_37	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0051843_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0051843_38	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0051843_38	UniRef90	UniRef90_F8J189	Putative Holliday junction resolvase	NA
UHGV-0051843_38	eggNOG-mapper	508419.F8J189_9CAUD	magnesium ion binding	NA
UHGV-0051843_38	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0051843_39	PHROG	phrog_4973	NA	unknown function
UHGV-0051843_39	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0051843_39	Structural annotation	PF14090, TIGR00373, COG5625	NA	NA
UHGV-0051843_40	PHROG	phrog_1163	NA	unknown function
UHGV-0051843_40	UniRef90	UniRef90_UPI000B1808B0	conserved phage C-terminal domain-containing protein	NA
UHGV-0051843_40	eggNOG-mapper	469604.HMPREF0946_00822	Transcriptional regulator	NA
UHGV-0051843_40	Pfam	PF19808	NA	DUF6291
UHGV-0051843_40	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0051843_40	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0051843_40	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0051843_40	Structural annotation	PF09524, PF19808, TIGR02220	NA	NA
UHGV-0051843_43	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0051843_43	UniRef90	UniRef90_A0A8D9CD32	Nucleoside triphosphate pyrophosphohydrolase	NA
UHGV-0051843_43	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0051843_43	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0051843_47	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0051843_48	PHROG	phrog_22292	NA	unknown function
UHGV-0051843_51	PHROG	phrog_1157	transposase	integration and excision
UHGV-0051843_51	UniRef90	UniRef90_A0A353JAG8	IS21 family transposase	NA
UHGV-0051843_51	eggNOG-mapper	865861.AZSU01000003_gene1897	PFAM Integrase catalytic	NA
UHGV-0051843_51	Pfam	PF00665	Integrase core domain	rve
UHGV-0051843_51	NCBIFam	NF033546.1	IS21 family transposase	NA
UHGV-0051843_51	COG	COG4584	Transposase	NA
UHGV-0051843_51	Structural annotation	PF02914, NF033546, COG4584	NA	NA
UHGV-0051843_52	PHROG	phrog_27475	NA	unknown function
UHGV-0051843_52	UniRef90	UniRef90_A0A353JAG9	Transposase	NA
UHGV-0051843_52	eggNOG-mapper	865861.AZSU01000003_gene1896	IstB-like ATP binding protein	NA
UHGV-0051843_52	PADLOC	DrmD_00013	DrmD	DISARM
UHGV-0051843_52	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0051843_52	COG	COG1484	DNA replication protein DnaC	NA