UHGV-0051984

Genome information

Genome length 57,504 bps

CDS count 96

Completeness 88.38% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0051984
vOTU ID	vOTU-015808
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_40436
BioSample	SAMEA2146009
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.71
Jumbo phage	No

Genome content
Genome length	57,504 bps
GC content	55.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	96
CDS density	87.97%
Average CDS length	529.78 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0051984_1	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0051984_1	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0051984_1	UniRef90	UniRef90_A0A564VW46	Thymidylate synthase	NA
UHGV-0051984_1	eggNOG-mapper	35760.BCHO_0602	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0051984_1	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0051984_1	NCBIFam	NF002497.0	thymidylate synthase	NA
UHGV-0051984_1	COG	COG0207	Thymidylate synthase	NA
UHGV-0051984_1	HAMAP	MF_00008	Thymidylate synthase [thyA]	NA
UHGV-0051984_1	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA
UHGV-0051984_2	eggNOG-mapper	216816.GS08_07610	NA	NA
UHGV-0051984_3	eggNOG-mapper	78346.BRUM_0422	NA	NA
UHGV-0051984_5	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051984_5	UniRef90	UniRef90_A0A1X2ZJG6	DNA-binding protein	NA
UHGV-0051984_5	eggNOG-mapper	158787.BSCA_0771	NA	NA
UHGV-0051984_5	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-0051984_6	PHROG	phrog_9103	transcriptional repressor	transcription regulation
UHGV-0051984_6	UniRef90	UniRef90_A0A0A7I2H4	XRE family transcriptional regulator	NA
UHGV-0051984_6	eggNOG-mapper	1151126.AQYI01000007_gene1567	NA	NA
UHGV-0051984_6	Structural annotation	PF20432, NF000090, COG1476	NA	NA
UHGV-0051984_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0051984_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0051984_7	UniRef90	UniRef90_A7A2N3	BRO family, N-terminal domain protein	NA
UHGV-0051984_7	eggNOG-mapper	78345.BMERY_0904	BRO family, N-terminal domain	NA
UHGV-0051984_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0051984_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0051984_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0051984_7	Structural annotation	PF03374, PF10547, TIGR02681, COG3617	NA	NA
UHGV-0051984_11	KOfam	K04074	divIVA; cell division initiation protein	NA
UHGV-0051984_11	UniRef90	UniRef90_A0A564VUN2	Cell wall synthesis protein Wag31	NA
UHGV-0051984_11	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-0051984_11	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0051984_11	COG	COG3599	Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD	NA
UHGV-0051984_11	Structural annotation	PF05103, MF_02011, NF010725	NA	NA
UHGV-0051984_12	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-0051984_13	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0051984_13	UniRef90	UniRef90_A0A0A7I2H6	Phage recombination protein Bet	NA
UHGV-0051984_13	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0051984_13	Pfam	PF03837	RecT family	RecT
UHGV-0051984_13	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0051984_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0051984_13	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0051984_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0051984_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0051984_15	UniRef90	UniRef90_A0A1X2ZJI9	Single-stranded DNA-binding protein	NA
UHGV-0051984_15	eggNOG-mapper	1622193.A0A0E3XA19_9CAUD	Single-strand binding protein family	NA
UHGV-0051984_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0051984_15	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0051984_16	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0051984_16	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0051984_16	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0051984_16	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0051984_18	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0051984_18	eggNOG-mapper	1437610.BREU_1410	NA	NA
UHGV-0051984_19	eggNOG-mapper	1394176.AWUO01000014_gene674	NA	NA
UHGV-0051984_20	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0051984_20	UniRef90	UniRef90_A0A564VUG8	Oligoribonuclease	NA
UHGV-0051984_20	eggNOG-mapper	1688.BCUN_0417	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0051984_20	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0051984_20	Structural annotation	PF13361, MF_00045, NF003765, COG1949	NA	NA
UHGV-0051984_21	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0051984_21	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0051984_21	UniRef90	UniRef90_R6P7Q1	dUTPase domain-containing protein	NA
UHGV-0051984_21	eggNOG-mapper	10506.DUT_PBCV1	dUTPase	NA
UHGV-0051984_21	Pfam	PF00692	dUTPase	dUTPase
UHGV-0051984_21	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0051984_21	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0051984_24	PHROG	phrog_236	nucleotide kinase	other
UHGV-0051984_24	UniRef90	UniRef90_A0A1X3A1Z3	NA	NA
UHGV-0051984_24	eggNOG-mapper	1435051.BMOU_0788	NA	NA
UHGV-0051984_24	Pfam	PF11753	NA	DUF3310
UHGV-0051984_24	Structural annotation	PF11753	NA	NA
UHGV-0051984_25	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-0051984_29	PHROG	phrog_21331	NA	unknown function
UHGV-0051984_29	UniRef90	UniRef90_A0A1X2YQU8	Peptidase	NA
UHGV-0051984_30	Structural annotation	TIGR03655	NA	NA
UHGV-0051984_32	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0051984_32	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0051984_32	Structural annotation	PF01815	NA	NA
UHGV-0051984_34	Structural annotation	PF08410, NF005233, COG5515	NA	NA
UHGV-0051984_38	Structural annotation	PF13384	NA	NA
UHGV-0051984_39	PHROG	phrog_908	NA	unknown function
UHGV-0051984_39	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0051984_43	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0051984_43	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0051984_43	UniRef90	UniRef90_A7A5D6	dUTP diphosphatase	NA
UHGV-0051984_43	eggNOG-mapper	1238186.AOCN01000026_gene2061	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0051984_43	Pfam	PF00692	dUTPase	dUTPase
UHGV-0051984_43	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0051984_43	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0051984_43	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0051984_45	Structural annotation	PF20760	NA	NA
UHGV-0051984_48	Structural annotation	PF10115, COG5453	NA	NA
UHGV-0051984_49	PHROG	phrog_547	phosphoesterase	other
UHGV-0051984_49	UniRef90	UniRef90_A0A1X2Z7T2	Metallophosphatase	NA
UHGV-0051984_49	eggNOG-mapper	1680.BADO_0635	phosphoesterase or phosphohydrolase	NA
UHGV-0051984_49	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0051984_49	COG	COG4186	NA	NA
UHGV-0051984_49	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-0051984_52	PHROG	phrog_37898	NA	unknown function
UHGV-0051984_52	UniRef90	UniRef90_A0A2U2MTW0	NA	NA
UHGV-0051984_52	eggNOG-mapper	702459.BBPR_0014	NA	NA
UHGV-0051984_52	Pfam	PF10387	NA	DUF2442
UHGV-0051984_53	PHROG	phrog_14333	NA	unknown function
UHGV-0051984_53	UniRef90	UniRef90_A0A6I1GPA6	Transcriptional regulator	NA
UHGV-0051984_53	eggNOG-mapper	547043.BIFPSEUDO_03942	NA	NA
UHGV-0051984_53	Pfam	PF13711	NA	DUF4160
UHGV-0051984_53	Structural annotation	PF13711	NA	NA
UHGV-0051984_54	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0051984_54	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0051984_54	UniRef90	UniRef90_R6P7P1	HTH cro/C1-type domain-containing protein	NA
UHGV-0051984_54	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-0051984_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051984_54	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0051984_55	UniRef90	UniRef90_A0A564VKW7	HTH cro/C1-type domain-containing protein	NA
UHGV-0051984_55	eggNOG-mapper	401473.BDP_1637	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0051984_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0051984_56	eggNOG-mapper	1435051.BMOU_1230	NA	NA
UHGV-0051984_59	eggNOG-mapper	445975.COLSTE_02319	NA	NA
UHGV-0051984_68	Structural annotation	PF06194	NA	NA
UHGV-0051984_70	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0051984_70	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051984_70	UniRef90	UniRef90_A0A0A7I6T1	HNHc domain-containing protein	NA
UHGV-0051984_70	eggNOG-mapper	1386089.N865_02065	HNH nucleases	NA
UHGV-0051984_70	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0051984_70	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0051984_71	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0051984_71	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-0051984_71	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0051984_71	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0051984_72	PHROG	phrog_226	minor tail protein	tail
UHGV-0051984_73	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0051984_73	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-0051984_73	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0051984_73	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0051984_73	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0051984_74	PHROG	phrog_104	portal protein	head and packaging
UHGV-0051984_74	UniRef90	UniRef90_A0A1X3A1Q2	Portal protein	NA
UHGV-0051984_74	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0051984_74	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0051984_75	PHROG	phrog_36668	NA	unknown function
UHGV-0051984_75	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-0051984_75	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0051984_75	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0051984_76	UniRef90	UniRef90_A0A087B686	Putative phage protein gp5	NA
UHGV-0051984_76	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0051984_77	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0051984_77	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0051984_77	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0051984_77	Structural annotation	PF02924	NA	NA
UHGV-0051984_78	PHROG	phrog_29	major head protein	head and packaging
UHGV-0051984_78	UniRef90	UniRef90_UPI0018C2985B	major capsid protein	NA
UHGV-0051984_78	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0051984_78	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0051984_78	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0051984_79	PHROG	phrog_36776	NA	unknown function
UHGV-0051984_79	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0051984_80	PHROG	phrog_25853	NA	unknown function
UHGV-0051984_80	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-0051984_80	eggNOG-mapper	35760.BCHO_0837	NA	NA
UHGV-0051984_80	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0051984_81	PHROG	phrog_32608	NA	unknown function
UHGV-0051984_81	Structural annotation	PF17395	NA	NA
UHGV-0051984_82	eggNOG-mapper	35760.BCHO_0835	NA	NA
UHGV-0051984_82	Structural annotation	PF12691	NA	NA
UHGV-0051984_83	PHROG	phrog_117	major tail protein	tail
UHGV-0051984_83	UniRef90	UniRef90_A0A087AF65	Gp22	NA
UHGV-0051984_83	eggNOG-mapper	35760.BCHO_0834	NA	NA
UHGV-0051984_83	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0051984_84	PHROG	phrog_36579	NA	unknown function
UHGV-0051984_86	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0051984_86	UniRef90	UniRef90_A0A1X2Z8L9	Structural protein	NA
UHGV-0051984_86	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0051984_86	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0051984_87	PHROG	phrog_6090	tail length tape measure protein	tail
UHGV-0051984_87	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0051984_87	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0051984_88	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0051984_88	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0051984_88	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0051984_89	PHROG	phrog_538	minor tail protein	tail
UHGV-0051984_89	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0051984_89	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0051984_89	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0051984_91	PHROG	phrog_9994	NA	unknown function
UHGV-0051984_91	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0051984_91	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0051984_92	eggNOG-mapper	1680.BADO_1227	NA	NA
UHGV-0051984_92	Structural annotation	PF08931	NA	NA
UHGV-0051984_93	KOfam	K14059	int; integrase	NA
UHGV-0051984_93	PHROG	phrog_1	integrase	integration and excision
UHGV-0051984_93	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-0051984_93	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0051984_93	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0051984_93	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0051984_93	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0051984_94	PHROG	phrog_28754	NA	unknown function
UHGV-0051984_94	eggNOG-mapper	1435051.BMOU_0760	outer membrane autotransporter barrel domain protein	NA
UHGV-0051984_94	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0051984_94	Structural annotation	PF18079	NA	NA
UHGV-0051984_95	PHROG	phrog_17147	NA	unknown function
UHGV-0051984_95	UniRef90	UniRef90_A0A0M4N1P7	Unassigned protein	NA
UHGV-0051984_95	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-0051984_95	Structural annotation	PF21430	NA	NA