UHGV-0052006

Genome information

Genome length 43,717 bps

CDS count 53

Completeness 88.90% (medium-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-0052006
vOTU ID	vOTU-022726
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_41133
BioSample	SAMEA2162573
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.47
Jumbo phage	No

Genome content
Genome length	43,717 bps
GC content	42.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.69%
Average CDS length	759.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052006_1	Structural annotation	PF04545, NF001069, COG2739	NA	NA
UHGV-0052006_3	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0052006_3	Structural annotation	PF21277	NA	NA
UHGV-0052006_5	PHROG	phrog_4105	NA	unknown function
UHGV-0052006_5	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0052006_6	KOfam	K14059	int; integrase	NA
UHGV-0052006_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0052006_6	UniRef90	UniRef90_A0A641X3J6	Tyrosine-type recombinase/integrase	NA
UHGV-0052006_6	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0052006_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052006_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052006_6	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0052006_7	PHROG	phrog_2837	tail protein	tail
UHGV-0052006_7	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0052006_7	eggNOG-mapper	1527519.A0A076G6L2_9CAUD	NA	NA
UHGV-0052006_7	Pfam	PF14301	NA	DUF4376
UHGV-0052006_7	Structural annotation	PF14301	NA	NA
UHGV-0052006_9	PHROG	phrog_7032	tail fiber protein	tail
UHGV-0052006_9	eggNOG-mapper	1500257.JQNM01000006_gene1746	NA	NA
UHGV-0052006_10	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0052006_10	UniRef90	UniRef90_A0A316S7W9	Phage-tail_3 domain-containing protein	NA
UHGV-0052006_10	eggNOG-mapper	1280706.AUJE01000003_gene2248	cellulase activity	NA
UHGV-0052006_10	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0052006_10	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0052006_10	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0052006_10	Structural annotation	PF13550, PF00041, PF16323, NF040662, COG4733	NA	NA
UHGV-0052006_11	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0052006_11	PHROG	phrog_329	minor tail protein	tail
UHGV-0052006_11	UniRef90	UniRef90_A0A3C1IQP9	NlpC/P60 domain-containing protein	NA
UHGV-0052006_11	eggNOG-mapper	1273103.NM10_03081	NlpC/P60 family	NA
UHGV-0052006_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0052006_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0052006_11	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0052006_12	PHROG	phrog_18	minor tail protein	tail
UHGV-0052006_12	UniRef90	UniRef90_UPI001032C9EC	NA	NA
UHGV-0052006_12	eggNOG-mapper	1280706.AUJE01000003_gene2250	Phage minor tail protein L	NA
UHGV-0052006_12	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0052006_12	COG	COG4672	Phage tail protein	NA
UHGV-0052006_12	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0052006_13	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0052006_13	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0052006_13	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0052006_14	PHROG	phrog_30973	NA	unknown function
UHGV-0052006_14	UniRef90	UniRef90_UPI001032C687	phage tail tape measure protein	NA
UHGV-0052006_14	eggNOG-mapper	484770.UFO1_2454	nuclear chromosome segregation	NA
UHGV-0052006_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0052006_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0052006_17	PHROG	phrog_290	minor tail protein	tail
UHGV-0052006_17	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-0052006_17	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0052006_17	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0052006_17	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0052006_18	PHROG	phrog_17431	NA	unknown function
UHGV-0052006_18	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0052006_19	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0052006_19	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0052006_20	PHROG	phrog_27032	NA	unknown function
UHGV-0052006_20	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0052006_21	PHROG	phrog_122	head decoration	head and packaging
UHGV-0052006_21	UniRef90	UniRef90_A0A3C1IQP2	DNA breaking-rejoining protein	NA
UHGV-0052006_21	Pfam	PF09956	NA	DUF2190
UHGV-0052006_21	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0052006_22	KOfam	K06904	NA	NA
UHGV-0052006_22	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0052006_22	UniRef90	UniRef90_A0A3C1INU1	Mu-like_gpT domain-containing protein	NA
UHGV-0052006_22	eggNOG-mapper	883156.HMPREF9282_01239	Caudovirus prohead protease	NA
UHGV-0052006_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0052006_22	COG	COG3087	Cell division protein FtsN	NA
UHGV-0052006_22	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0052006_23	PHROG	phrog_21	portal protein	head and packaging
UHGV-0052006_23	UniRef90	UniRef90_A0A3C1INQ6	Phage portal protein	NA
UHGV-0052006_23	eggNOG-mapper	1415774.U728_498	Phage portal protein, lambda family	NA
UHGV-0052006_23	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0052006_23	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0052006_23	COG	COG5511	Phage capsid protein	NA
UHGV-0052006_23	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0052006_25	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0052006_25	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0052006_25	UniRef90	UniRef90_A0A3C1INY8	Terminase	NA
UHGV-0052006_25	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-0052006_25	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0052006_25	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0052006_25	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0052006_25	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0052006_26	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0052006_26	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0052006_26	UniRef90	UniRef90_UPI001E630431	terminase small subunit	NA
UHGV-0052006_26	eggNOG-mapper	864563.HMPREF9166_0572	transposase activity	NA
UHGV-0052006_26	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0052006_28	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0052006_28	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0052006_28	UniRef90	UniRef90_A0A498R5V2	N6 adenine-specific dna methyltransferase d21 class	NA
UHGV-0052006_28	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0052006_28	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0052006_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052006_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0052006_28	COG	COG0863	DNA modification methylase	NA
UHGV-0052006_28	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0052006_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0052006_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0052006_29	UniRef90	UniRef90_A0A143XG15	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0052006_29	eggNOG-mapper	649747.HMPREF0083_01686	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0052006_29	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0052006_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0052006_29	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0052006_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0052006_29	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0052006_30	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0052006_30	UniRef90	UniRef90_A0A4Q3BWL3	ParB domain-containing protein (Fragment)	NA
UHGV-0052006_30	eggNOG-mapper	1123288.SOV_2c03720	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0052006_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0052006_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052006_30	COG	COG0863	DNA modification methylase	NA
UHGV-0052006_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0052006_31	Pfam	PF08279	HTH domain	HTH_11
UHGV-0052006_31	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0052006_32	PHROG	phrog_824	NA	unknown function
UHGV-0052006_32	UniRef90	UniRef90_A0A316S9D0	VRR-NUC domain-containing protein	NA
UHGV-0052006_32	eggNOG-mapper	1123288.SOV_4c02500	Archaeal holliday junction resolvase (hjc)	NA
UHGV-0052006_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0052006_32	Structural annotation	PF18743, MF_01490, NF040854, COG1591	NA	NA
UHGV-0052006_33	PHROG	phrog_31911	NA	unknown function
UHGV-0052006_33	eggNOG-mapper	1273103.NM10_03231	NA	NA
UHGV-0052006_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0052006_34	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0052006_34	UniRef90	UniRef90_A0A1Y4WCX6	ParB domain-containing protein	NA
UHGV-0052006_34	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-0052006_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0052006_34	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0052006_34	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0052006_34	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0052006_35	PHROG	phrog_9804	NA	unknown function
UHGV-0052006_35	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0052006_35	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0052006_36	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052006_36	eggNOG-mapper	1122973.KB904232_gene344	NA	NA
UHGV-0052006_36	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0052006_37	PHROG	phrog_11269	NA	unknown function
UHGV-0052006_37	eggNOG-mapper	1304874.JAFY01000002_gene108	NA	NA
UHGV-0052006_38	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0052006_38	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0052006_38	UniRef90	UniRef90_A0A559IZI1	MBL fold metallo-hydrolase	NA
UHGV-0052006_38	eggNOG-mapper	926692.AZYG01000059_gene79	Metallo-beta-lactamase superfamily	NA
UHGV-0052006_38	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0052006_38	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0052006_38	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0052006_39	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0052006_39	eggNOG-mapper	557598.LHK_01792	NA	NA
UHGV-0052006_39	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0052006_41	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0052006_41	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052006_41	UniRef90	UniRef90_A0A1L2K2K3	Nucleoside triphosphate hydrolase	NA
UHGV-0052006_41	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0052006_41	PADLOC	AAA_15	NA	NA
UHGV-0052006_41	Pfam	PF13476	AAA domain	AAA_23
UHGV-0052006_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0052006_41	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0052006_43	COG	COG1388	LysM repeat	NA
UHGV-0052006_45	PHROG	phrog_6297	NA	unknown function
UHGV-0052006_45	UniRef90	UniRef90_D6KLD3	Hypoth_Ymh domain-containing protein	NA
UHGV-0052006_45	eggNOG-mapper	875454.BAEW01000002_gene502	NA	NA
UHGV-0052006_45	Pfam	PF09509	NA	Hypoth_Ymh
UHGV-0052006_45	NCBIFam	TIGR02391.1	TIGR02391 family protein	NA
UHGV-0052006_45	Structural annotation	PF09509, TIGR02391	NA	NA
UHGV-0052006_47	PHROG	phrog_585	NA	unknown function
UHGV-0052006_47	UniRef90	UniRef90_A0A7C8HFE7	NA	NA
UHGV-0052006_47	eggNOG-mapper	862517.HMPREF9225_1672	NA	NA
UHGV-0052006_47	Pfam	PF10711	NA	DUF2513
UHGV-0052006_47	Structural annotation	PF10711, MF_01819, TIGR04176, COG1695	NA	NA
UHGV-0052006_49	UniRef90	UniRef90_A0A098AVW3	Lambda repressor-like, DNA-binding domain	NA
UHGV-0052006_49	eggNOG-mapper	864563.HMPREF9166_1836	NA	NA
UHGV-0052006_49	Pfam	PF05339	NA	DUF739
UHGV-0052006_49	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0052006_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0052006_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0052006_50	UniRef90	UniRef90_A0A1C6HM10	LexA repressor	NA
UHGV-0052006_50	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0052006_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052006_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0052006_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0052006_50	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0052006_52	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0052006_52	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0052006_52	UniRef90	UniRef90_R5BKN3	PemK family protein	NA
UHGV-0052006_52	eggNOG-mapper	546271.Selsp_1362	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0052006_52	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0052006_52	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0052006_52	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0052006_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0052006_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0052006_53	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0052006_53	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0052006_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0052006_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0052006_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0052006_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0052006_53	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA